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MZ028627.1__QWS68274.1__SEA_VANLEE_158__00157
Bact-VirMZ028627.1__QWS68274.1__SEA_VANLEE_158__00157
Identity
- Accession:
- MZ028627 ↗
- Kingdom:
- phage
Quality
93.9
mean pLDDT
Taxonomy
TaxID: 2845816
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 23-124
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ztaA00 | 1.10.490.130 | Mainly Alpha › Orthogonal Bundle › Globin-like › | 0.70 | 45.0 | 4.05e-01 | 96.1% | 47.5% |
| 3htaC00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.65 | 39.0 | 3.22e-01 | 100.0% | 32.3% |
| 5xs2B02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.65 | 41.0 | 3.82e-01 | 98.0% | 50.0% |
| 3cuqA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 47.0 | 5.24e-01 | 98.0% | 98.8% |
| 6lcuA02 | 1.10.10.470 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Maltooligosyl trehalose synthase; domain 4 | 0.62 | 42.0 | 4.22e-01 | 100.0% | 67.6% |
| 3f2eA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 40.0 | 4.38e-01 | 93.1% | 83.1% |
| 3h36A00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.59 | 42.0 | 4.71e-01 | 98.0% | 98.7% |
| 2gfhA02 | 1.20.120.710 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain | 0.59 | 35.0 | 3.82e-01 | 95.1% | 69.8% |
| 3hdiA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.58 | 52.0 | 4.16e-01 | 99.0% | 73.2% |
| 1a41A02 | 1.20.120.380 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 | 0.56 | 43.0 | 4.48e-01 | 100.0% | 89.4% |
| 3a11B01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.55 | 37.0 | 3.52e-01 | 91.2% | 55.2% |
| 7lxuE01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.55 | 49.0 | 3.83e-01 | 97.1% | 66.8% |
| 1hr6B02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.55 | 49.0 | 3.90e-01 | 99.0% | 76.0% |
| 5c8aA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.55 | 34.0 | 3.78e-01 | 94.1% | 80.8% |
| 3lcrB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 44.0 | 3.20e-01 | 92.2% | 32.4% |
| 4eadA02 | 3.40.1030.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain | 0.52 | 43.0 | 3.38e-01 | 93.1% | 93.4% |
| 1yowA00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.52 | 42.0 | 3.32e-01 | 90.2% | 87.0% |
| 2g47A03 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.52 | 46.0 | 3.58e-01 | 99.0% | 74.4% |
| 2ncoA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.52 | 37.0 | 3.75e-01 | 99.0% | 74.5% |
| 6xkyA01 | 1.20.1330.10 | Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain | 0.51 | 42.0 | 3.42e-01 | 87.3% | 64.2% |
| 2zb9A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 43.0 | 3.98e-01 | 98.0% | 71.7% |
| 2mqaA00 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.51 | 36.0 | 3.43e-01 | 99.0% | 60.8% |
| 2dg8D00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 37.0 | 3.17e-01 | 94.1% | 45.7% |
| 1wjzA00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.50 | 36.0 | 3.71e-01 | 99.0% | 80.9% |
| 6qm7J00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.50 | 44.0 | 3.45e-01 | 94.1% | 68.6% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3419290 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.72 | 37.0 | 4.90e-01 | 83.3% | 92.7% |
| 3817152 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 37.0 | 4.67e-01 | 83.3% | 90.0% |
| 3363421 | 101.1.2.730 ↗ | alpha arrays › HTH › HTH › winged helix domain › Eaf7 | 0.67 | 38.0 | 4.64e-01 | 93.1% | 87.7% |
| 3794203 | 101.11.1.0 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | 0.66 | 47.0 | 5.04e-01 | 99.0% | 87.1% |
| 3606798 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 34.0 | 4.34e-01 | 88.2% | 89.1% |
| 4486248 | 3586.1.1.0 ↗ | alpha arrays › Protelomerase stirrup domain › Protelomerase stirrup domain › Protelomerase stirrup domain | 0.66 | 39.0 | 4.38e-01 | 87.3% | 78.7% |
| 3211136 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.65 | 42.0 | 4.81e-01 | 94.1% | 94.3% |
| 5048002 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.65 | 55.0 | 5.08e-01 | 95.1% | 89.6% |
| 3849657 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.63 | 53.0 | 5.34e-01 | 96.1% | 93.0% |
| 3400463 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.63 | 43.0 | 4.47e-01 | 93.1% | 75.8% |
| 5081699 | 186.1.1.4 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 | 0.62 | 41.0 | 4.30e-01 | 92.2% | 75.6% |
| 3586132 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.62 | 42.0 | 4.33e-01 | 99.0% | 74.7% |
| 3644409 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.62 | 41.0 | 4.21e-01 | 100.0% | 70.0% |
| 3744818 | 101.1.1.213 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HRI2_3H | 0.61 | 38.0 | 4.26e-01 | 100.0% | 85.3% |
| 4839189 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.60 | 41.0 | 3.93e-01 | 98.0% | 59.0% |
| 134570 | 3273.1.1.1 ↗ | alpha arrays › Filamentous archaeal viruses coat proteins › Filamentous archaeal viruses coat proteins › Filamentous archaeal viruses coat proteins › Sulf_coat_C | 0.60 | 40.0 | 4.38e-01 | 93.1% | 83.1% |
| 4982919 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.60 | 35.0 | 3.43e-01 | 98.0% | 50.4% |
| 3252768 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.58 | 50.0 | 3.29e-01 | 100.0% | 67.2% |
| 5011766 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 38.0 | 3.42e-01 | 98.0% | 47.9% |
| 3382589 | 633.16.1.0 ↗ | alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like | 0.55 | 34.0 | 3.15e-01 | 93.1% | 46.7% |
| 5074496 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.55 | 34.0 | 3.75e-01 | 91.2% | 78.8% |
| 4080250 | 2003.1.5.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase | 0.54 | 48.0 | 3.23e-01 | 100.0% | 38.1% |
| 3938517 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.54 | 40.0 | 3.34e-01 | 99.0% | 44.3% |
| 4932415 | 138.1.1.2 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C | 0.54 | 37.0 | 3.85e-01 | 94.1% | 76.8% |
| 4055922 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.54 | 35.0 | 2.60e-01 | 96.1% | 23.4% |
| 3913809 | 150.1.1.101 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › MARVEL | 0.53 | 38.0 | 3.35e-01 | 77.5% | 50.7% |
| 4255360 | 1037.1.1.1 ↗ | alpha bundles › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › LGT | 0.53 | 39.0 | 2.81e-01 | 75.5% | 69.1% |
| 4467337 | 304.41.1.1 ↗ | a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N | 0.53 | 34.0 | 3.11e-01 | 94.1% | 46.4% |
| 4579957 | 304.41.1.1 ↗ | a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N | 0.53 | 32.0 | 2.86e-01 | 86.3% | 40.7% |
| 3988566 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.52 | 29.0 | 3.31e-01 | 76.5% | 74.3% |
| 4934264 | 604.39.1.6 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › QueT | 0.52 | 45.0 | 3.82e-01 | 99.0% | 82.2% |
| 3177267 | 101.1.1.65 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 | 0.51 | 40.0 | 4.12e-01 | 98.0% | 87.0% |
| 3478383 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.51 | 32.0 | 2.93e-01 | 81.4% | 43.4% |
| 3306315 | 109.4.1.189 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 | 0.51 | 30.0 | 3.13e-01 | 91.2% | 61.1% |
| 3175191 | 627.1.1.1 ↗ | alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › VPS9 | 0.50 | 43.0 | 3.57e-01 | 90.2% | 71.2% |