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MZ043897.1__QVW54001.1__X__00042

Bact-Vir

MZ043897.1__QVW54001.1__X__00042

Identity

Accession:
MZ043897 ↗
Kingdom:
phage

Quality

61.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lederbergvirus› Escherichia_phage_E212

TaxID: 2836069

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-46
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bs3A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.69 46.0 4.16e-01 84.1% 51.7%
1nvmA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.64 54.0 4.87e-01 100.0% 71.9%
1vb3A01 3.90.1380.10 Alpha Beta › Alpha-Beta Complex › threonine synthase, domain 1, chain A › Threonine synthase, N-terminal domain 0.64 43.0 3.66e-01 72.7% 40.7%
2d1hB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 51.0 4.01e-01 97.7% 91.8%
7ce1A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.58 40.0 3.87e-01 79.5% 63.5%
3drwB01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.56 41.0 2.61e-01 93.2% 94.3%
1zv1A00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.56 43.0 4.13e-01 100.0% 76.3%
2fzlA02 6.10.140.1180 Special › Helix non-globular › Helix Hairpins › 0.54 37.0 3.48e-01 72.7% 51.6%
2n7zA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.53 42.0 3.37e-01 100.0% 42.5%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4284927 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.72 57.0 5.29e-01 93.2% 77.6%
3824070 103.1.1.109 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PF28551 0.70 60.0 5.33e-01 100.0% 87.7%
4530585 5069.1.3.121 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › IspA 0.65 52.0 4.10e-01 100.0% 70.4%
5028710 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.64 44.0 3.70e-01 84.1% 42.7%
4032282 101.1.4.29 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › DUF2316 0.56 42.0 3.62e-01 90.9% 76.5%
1544881 632.2.1.4 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › GA-like 0.54 43.0 4.15e-01 100.0% 76.8%
4442514 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.54 41.0 4.05e-01 100.0% 90.0%
D2 medium residues 57-107
PDB
D3 medium residues 168-220
PDB
Domain cluster: rep: OQ547903.1__WFD61275.1__X__00068__D9-64
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04448.18 best DUF551 40.5 5.90e-10 100.0% 88.2%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 54.0 4.43e-01 100.0% 56.0%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 51.0 4.67e-01 100.0% 75.3%
3m1uA01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.59 49.0 3.54e-01 100.0% 57.3%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 45.0 4.37e-01 98.1% 91.9%
3gt2A00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.55 46.0 3.55e-01 100.0% 40.7%
2gzbB00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 42.0 3.24e-01 98.1% 96.3%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 42.0 3.85e-01 100.0% 96.2%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 41.0 3.56e-01 100.0% 65.7%
2j73A00 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 39.0 3.21e-01 84.9% 85.4%
2w5qA01 3.30.1120.170 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.51 34.0 2.93e-01 84.9% 40.9%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3219409 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 52.0 4.42e-01 90.6% 88.9%
3357873 2.1.1.315 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB3, CDC24_OB2, CDC24_OB1 0.62 42.0 2.48e-01 73.6% 17.0%
4275625 375.1.1.47 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC 0.55 42.0 4.07e-01 83.0% 95.0%
3179802 4027.1.1.0 ↗ beta barrels › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit 0.55 36.0 3.98e-01 77.4% 90.0%
3643750 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.55 38.0 2.67e-01 73.6% 79.5%
4389625 375.1.1.47 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC 0.54 40.0 4.00e-01 81.1% 94.5%
4036512 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.52 37.0 2.71e-01 81.1% 84.4%
3401706 4.12.1.0 ↗ beta barrels › SH3 › Methuselah ectodomain › Methuselah ectodomain 0.52 42.0 3.37e-01 98.1% 81.6%
3854591 375.1.1.42 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rep_fac-A_C 0.50 32.0 3.57e-01 94.3% 100.0%
3474789 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.50 34.0 2.44e-01 100.0% 20.5%
3724295 72.1.1.0 ↗ beta sandwiches › gamma-Crystallin-like › gamma-Crystallin-like › gamma-Crystallin-like 0.50 41.0 3.51e-01 100.0% 70.0%