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MZ047271.2__QVW54061.1__KJILBIEH_00003__00003

Bact-Vir

MZ047271.2__QVW54061.1__KJILBIEH_00003__00003

Identity

Accession:
MZ047271 ↗
Kingdom:
phage

Quality

93.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Campylobacter_phage_PC10

TaxID: 2836053

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-63
PDB
Domain cluster: rep: IMGVR_UViG_3300033149_002550-3300033149-Ga0366834_12210606__D85-141
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2iylD01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.78 63.0 6.21e-01 88.5% 81.5%
1ls1A01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.77 65.0 5.76e-01 93.4% 92.1%
3b9qA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.76 65.0 5.75e-01 95.1% 76.4%
5l3wA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.76 55.0 4.87e-01 75.4% 64.3%
1gjsA00 1.10.8.40 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Albumin-binding domain 0.73 50.0 4.93e-01 78.7% 67.7%
1zu4A01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.73 61.0 5.44e-01 95.1% 79.3%
3s63A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.65 54.0 4.88e-01 95.1% 76.1%
1fadA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.65 47.0 4.13e-01 78.7% 91.6%
1jetA03 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.65 54.0 3.74e-01 95.1% 82.4%
5w87A01 3.30.2410.10 Alpha Beta › 2-Layer Sandwich › Hect, E3 ligase catalytic fold › Hect, E3 ligase catalytic domain 0.62 44.0 3.88e-01 77.0% 76.6%
4jkzA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 51.0 3.76e-01 95.1% 59.2%
3lv8A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 44.0 3.03e-01 77.0% 31.4%
4ysxC00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.60 44.0 3.40e-01 82.0% 64.1%
2oocB00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.59 50.0 4.29e-01 100.0% 82.9%
2c2jA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.58 41.0 3.09e-01 75.4% 80.6%
6nbrC00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 45.0 2.87e-01 88.5% 47.8%
3wa8B00 1.10.520.40 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › CRISPR-associated protein Cse2 0.56 45.0 3.41e-01 98.4% 43.4%
2dnaA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.56 39.0 3.79e-01 75.4% 65.7%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4028766 181.1.1.1 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.81 69.0 6.04e-01 93.4% 91.1%
4932398 181.1.1.1 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.78 67.0 5.94e-01 93.4% 94.1%
5054797 181.1.1.0 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.74 63.0 6.36e-01 93.4% 95.0%
5019219 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.69 54.0 3.38e-01 82.0% 54.3%
5009729 1030.1.1.0 ↗ alpha duplicates or obligate multimers › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 0.68 57.0 4.76e-01 98.4% 65.2%
4554416 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.64 46.0 4.14e-01 78.7% 81.1%
3179703 1084.1.1.2 ↗ extended segments › Photosystem II reaction center W protein, chloroplastic › Photosystem II reaction center W protein, chloroplastic › Photosystem II reaction center W protein, chloroplastic › Pmp3 (DEPRECATED) 0.64 48.0 5.20e-01 93.4% 100.0%
3359208 103.12.1.9 ↗ alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › Pmp3 0.62 44.0 4.67e-01 91.8% 95.9%
3283752 101.1.1.13 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.55 37.0 3.29e-01 95.1% 45.3%
3231816 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.54 38.0 3.90e-01 75.4% 78.3%
3262509 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.53 40.0 3.57e-01 82.0% 60.0%
3293154 101.1.2.472 ↗ alpha arrays › HTH › HTH › winged helix domain › A_thal_3526 0.53 39.0 3.96e-01 85.2% 83.3%
3889817 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.53 40.0 3.72e-01 82.0% 66.3%
4239 5069.1.3.1 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Sdh_cyt 0.52 38.0 3.16e-01 85.2% 76.0%