←Back to structures

MZ078141.1__QVQ57059.1__ELBI_54__00054

Bact-Vir

MZ078141.1__QVQ57059.1__ELBI_54__00054

Identity

Accession:
MZ078141 ↗
Kingdom:
phage

Quality

89.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Anabaena_phage_Elbi

TaxID: 2833876

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-65
PDB
Domain cluster: rep: IMGVR_UViG_3300009673_000398-3300009673-Ga0116185_100427710__D5-60
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.78 61.0 6.05e-01 100.0% 80.6%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.77 62.0 5.85e-01 100.0% 73.7%
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.72 58.0 5.49e-01 100.0% 73.7%
1ywhC03 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.71 52.0 4.70e-01 100.0% 56.8%
1x9tA02 3.90.1620.10 Alpha Beta › Alpha-Beta Complex › adenovirus 2 penton base, domain 2 › adenovirus 2 penton base, domain 2 0.67 57.0 3.81e-01 100.0% 40.4%
2hfqA00 3.10.510.10 Alpha Beta › Roll › NE1680-like fold › NE1680-like 0.66 55.0 5.01e-01 100.0% 69.4%
4njcA00 3.10.20.730 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like 0.66 51.0 5.24e-01 100.0% 90.0%
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.66 45.0 3.54e-01 100.0% 32.9%
4hasA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.64 47.0 3.99e-01 78.1% 62.5%
4emeC02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.64 55.0 4.39e-01 100.0% 73.3%
4dyoA02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.64 53.0 4.31e-01 100.0% 72.7%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 47.0 3.98e-01 79.7% 48.5%
3hh7A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.63 41.0 4.08e-01 96.9% 64.6%
3bzwF00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.62 43.0 2.89e-01 71.9% 94.7%
1zoyB01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.62 54.0 4.63e-01 100.0% 79.2%
2bs2B01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.62 54.0 4.61e-01 100.0% 81.1%
2cuwA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.61 52.0 4.90e-01 100.0% 97.6%
4a18X01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.61 48.0 4.61e-01 100.0% 74.7%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.59 49.0 4.23e-01 96.9% 57.8%
3q8pB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.59 48.0 4.13e-01 93.8% 61.1%
4mt4A00 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.59 43.0 2.66e-01 82.8% 93.4%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.58 51.0 4.22e-01 100.0% 80.3%
2il5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 41.0 3.20e-01 81.2% 88.9%
1n26A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 36.0 3.42e-01 100.0% 52.6%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.55 44.0 3.31e-01 92.2% 49.7%
3v6oA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 35.0 3.26e-01 100.0% 47.1%
4lejA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 38.0 2.89e-01 100.0% 27.8%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.55 42.0 2.85e-01 84.4% 91.5%
2xskA00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 44.0 3.88e-01 100.0% 60.0%
1hq6B00 3.50.20.10 Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B 0.54 45.0 3.22e-01 98.4% 36.8%
2q7nA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 41.0 3.72e-01 100.0% 57.1%
2fggA01 3.30.160.240 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 0.54 40.0 3.87e-01 85.9% 69.3%
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 47.0 3.23e-01 100.0% 86.3%
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.54 41.0 3.94e-01 98.4% 71.4%
2nytD00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.53 43.0 3.21e-01 98.4% 33.5%
3d0jA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 36.0 2.92e-01 100.0% 34.1%
1r0uA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 44.0 3.49e-01 100.0% 92.3%
5wm1A02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.52 43.0 3.76e-01 100.0% 78.9%
4my0C01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 40.0 3.22e-01 90.6% 79.0%
1e3hA03 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.51 40.0 2.90e-01 90.6% 52.1%
1m0wA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 36.0 3.12e-01 98.4% 43.5%
6heiA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.50 45.0 2.84e-01 100.0% 48.3%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3227513 3115.1.1.3 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › NRF 0.78 63.0 5.32e-01 100.0% 53.3%
223776 3115.4.1.1 ↗ a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 0.78 61.0 5.91e-01 100.0% 76.1%
4084879 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.77 66.0 5.98e-01 100.0% 70.6%
4951473 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.76 62.0 6.26e-01 100.0% 88.9%
3517068 3115.1.1.6 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 0.75 62.0 6.25e-01 100.0% 89.2%
5000510 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.75 60.0 5.67e-01 100.0% 73.3%
5065436 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.74 60.0 6.04e-01 100.0% 87.5%
4983090 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.74 60.0 5.55e-01 100.0% 70.9%
2831852 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.73 59.0 5.05e-01 100.0% 55.4%
4128974 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.73 63.0 5.83e-01 100.0% 75.0%
2106285 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.73 58.0 4.89e-01 100.0% 51.9%
4648475 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.72 58.0 6.02e-01 100.0% 95.0%
4943401 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.72 60.0 5.44e-01 100.0% 68.2%
4942818 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.72 63.0 4.88e-01 100.0% 45.0%
3874464 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.70 58.0 3.61e-01 100.0% 16.6%
5030993 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.70 56.0 5.21e-01 100.0% 70.0%
3508212 3115.1.1.6 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 0.69 55.0 5.41e-01 100.0% 82.9%
3892842 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.69 56.0 5.64e-01 100.0% 90.8%
4974839 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 59.0 4.51e-01 98.4% 99.3%
4443054 3115.1.1.9 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › YjeJ 0.67 57.0 4.71e-01 100.0% 52.5%
3688945 11.1.1.644 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Pom152 0.66 51.0 4.16e-01 100.0% 46.1%
4332626 3532.1.1.0 ↗ alpha arrays › RNA-binding domain of telomerase › RNA-binding domain of telomerase › RNA-binding domain of telomerase 0.66 57.0 3.32e-01 100.0% 10.8%
3280008 3115.1.1.2 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › DUF4288 0.65 55.0 5.03e-01 100.0% 80.0%
3726903 11.1.1.644 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Pom152 0.64 49.0 4.05e-01 100.0% 46.1%
4996552 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.64 54.0 4.92e-01 100.0% 70.6%
3350520 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.62 50.0 3.12e-01 100.0% 14.9%
3411558 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.61 52.0 4.16e-01 100.0% 47.9%
3619496 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 54.0 3.33e-01 100.0% 18.9%
3265334 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.60 42.0 3.51e-01 73.4% 74.5%
3507557 4081.1.1.11 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › CreD 0.59 54.0 3.60e-01 100.0% 34.9%
4867394 3820.1.1.1 ↗ a+b complex topology › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › Cas9_PI 0.58 51.0 4.47e-01 100.0% 99.0%
3510702 2004.1.1.107 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DnaB_C 0.58 41.0 2.87e-01 81.2% 20.0%
4243035 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.57 49.0 3.05e-01 100.0% 20.8%
4620869 1.1.5.57 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Mycop_pep_DUF31 0.57 51.0 3.19e-01 100.0% 23.9%
3218957 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.57 50.0 4.08e-01 96.9% 77.4%
5026566 2488.1.1.11 ↗ a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SFM1-like 0.56 43.0 3.19e-01 100.0% 28.5%
3700061 327.7.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.56 47.0 4.33e-01 98.4% 72.7%
4954522 878.1.1.1 ↗ a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.56 38.0 3.38e-01 70.3% 95.7%
3729534 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.56 47.0 3.75e-01 100.0% 49.0%
4374005 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 42.0 3.52e-01 100.0% 46.1%
3787702 2487.1.1.0 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.56 46.0 3.65e-01 100.0% 98.1%
3994984 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.56 48.0 4.87e-01 100.0% 100.0%
3813872 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.55 46.0 3.10e-01 100.0% 99.3%
3999001 10.7.1.0 ↗ beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.55 47.0 4.07e-01 100.0% 60.0%
3587744 9.9.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934 0.55 48.0 3.80e-01 100.0% 99.3%
3430645 5.1.3.159 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF7595 0.55 45.0 3.05e-01 100.0% 96.7%
4942869 303.1.1.1 ↗ a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC 0.54 44.0 3.41e-01 96.9% 67.6%
3787050 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.54 44.0 4.03e-01 100.0% 67.4%
3220022 382.1.1.27 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › DUF7773 0.53 46.0 3.84e-01 100.0% 63.6%
3929299 1116.1.1.2 ↗ a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain › MCLN_ECD 0.53 44.0 3.13e-01 98.4% 35.7%
3204836 2492.1.1.32 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › OTT_1508_deam 0.53 43.0 3.35e-01 98.4% 39.4%
3592488 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.52 40.0 2.58e-01 84.4% 32.7%
3490255 11.1.4.114 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF7062 0.52 37.0 3.34e-01 100.0% 50.0%
5000210 11.1.1.14 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.52 43.0 3.71e-01 96.9% 86.4%
3995060 11.1.4.67 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PKC_C2 0.52 35.0 3.20e-01 95.3% 48.4%
3619356 1116.1.1.2 ↗ a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain › MCLN_ECD 0.51 41.0 3.02e-01 95.3% 41.9%
3483062 221.1.1.116 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_6 0.51 43.0 3.62e-01 100.0% 90.0%
3900025 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.51 44.0 4.32e-01 100.0% 94.3%
3395999 382.1.1.6 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › QVR 0.51 43.0 3.76e-01 100.0% 63.8%
3992265 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 38.0 3.69e-01 100.0% 72.0%
5037893 213.1.1.29 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_9 0.50 40.0 3.26e-01 90.6% 86.2%
3217546 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.50 42.0 3.56e-01 100.0% 53.9%