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MZ079855.1__QXN67566.1__X__00083

Bact-Vir

MZ079855.1__QXN67566.1__X__00083

Identity

Accession:
MZ079855 ↗
Kingdom:
phage

Quality

81.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-52
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zyzB02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.72 50.0 4.05e-01 74.0% 70.5%
1wjwA01 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.70 54.0 4.52e-01 92.0% 49.4%
7n0eB02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.67 44.0 3.35e-01 70.0% 27.0%
3pqvC01 3.65.10.20 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › RNA 3'-terminal phosphate cyclase domain 0.66 45.0 2.85e-01 86.0% 14.1%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 42.0 3.59e-01 70.0% 39.8%
1khmA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.64 48.0 4.10e-01 92.0% 48.3%
3v46A00 3.40.50.11990 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › RNA polymerase II accessory factor, Cdc73 C-terminal domain 0.61 39.0 2.77e-01 78.0% 20.0%
3s95A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 46.0 3.89e-01 94.0% 48.9%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 45.0 3.79e-01 100.0% 45.8%
1b24A01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.59 45.0 3.87e-01 100.0% 49.5%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.59 46.0 3.78e-01 92.0% 65.7%
3gxwC00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 41.0 3.28e-01 74.0% 51.0%
1dhkB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 43.0 2.89e-01 80.0% 54.9%
1j4wA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.57 45.0 4.05e-01 92.0% 63.5%
3ue3A01 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.57 46.0 3.87e-01 98.0% 61.9%
3f02B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.56 45.0 3.58e-01 88.0% 43.0%
2ab5A02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.56 41.0 3.15e-01 84.0% 32.8%
3hz7A00 3.30.110.40 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › TusA-like domain 0.56 36.0 3.29e-01 70.0% 43.8%
1wp0A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 45.0 3.24e-01 96.0% 37.5%
6kf9G01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 36.0 3.15e-01 72.0% 41.5%
2ctkA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.55 45.0 3.71e-01 100.0% 52.9%
3aonA00 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 40.0 2.80e-01 82.0% 29.3%
2anrA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.55 45.0 4.06e-01 100.0% 73.3%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 43.0 3.69e-01 92.0% 51.7%
3m05B01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 43.0 3.70e-01 98.0% 54.3%
7qh2C03 3.30.70.2740 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 42.0 3.84e-01 98.0% 61.5%
5bmnA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.54 41.0 3.67e-01 92.0% 71.1%
2l48A00 3.30.70.2030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 43.0 3.82e-01 100.0% 60.0%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.54 36.0 3.42e-01 72.0% 97.0%
1e3mA01 3.40.1170.10 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › DNA repair protein MutS, domain I 0.54 41.0 3.21e-01 90.0% 58.5%
4dgwC00 2.60.40.2690 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 40.0 2.97e-01 84.0% 30.5%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 41.0 3.39e-01 98.0% 44.3%
1vigA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.53 42.0 3.91e-01 98.0% 74.6%
2nq2D00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 35.0 2.35e-01 70.0% 14.9%
2yweA03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.52 38.0 3.41e-01 98.0% 52.4%
2p92A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.52 40.0 3.43e-01 98.0% 49.5%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.19e-01 100.0% 39.2%
2vpzB01 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 39.0 3.06e-01 94.0% 53.3%
1x60A01 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.51 39.0 3.62e-01 94.0% 69.4%
3obaA03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.51 36.0 2.30e-01 80.0% 34.6%
2k6vA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 42.0 2.94e-01 96.0% 35.5%
1ti2B01 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 38.0 3.03e-01 94.0% 60.9%
3a2eA00 3.30.430.20 Alpha Beta › 2-Layer Sandwich › Killer Toxin P4; Chain A › Gnk2 domain, C-X8-C-X2-C motif 0.50 34.0 2.70e-01 70.0% 57.4%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4068249 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.80 54.0 4.65e-01 92.0% 45.0%
3396525 327.11.2.20 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › BICC1_KH 0.78 61.0 5.30e-01 92.0% 56.0%
3894384 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.73 51.0 4.58e-01 92.0% 52.9%
3388222 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.70 51.0 4.52e-01 92.0% 53.3%
4525955 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.70 50.0 4.22e-01 92.0% 44.4%
3772566 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.69 52.0 4.55e-01 92.0% 54.7%
3211626 304.162.1.2 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › FLAD1_M 0.69 52.0 4.37e-01 92.0% 48.2%
3200904 304.162.1.2 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › FLAD1_M 0.68 49.0 4.40e-01 92.0% 53.3%
3839430 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.67 49.0 4.36e-01 92.0% 53.3%
3519959 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.67 51.0 4.68e-01 92.0% 63.1%
4029253 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.67 51.0 4.65e-01 92.0% 61.4%
3486254 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.66 53.0 4.62e-01 92.0% 58.7%
3289385 3433.1.2.1 a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain › ParB_dimer 0.64 52.0 5.23e-01 100.0% 96.0%
3915000 327.11.2.20 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › BICC1_KH 0.64 55.0 4.97e-01 100.0% 78.6%
2533026 304.159.1.1 a+b two layers › Alpha-beta plaits › Alpha-beta plait domain in NisB › Alpha-beta plait domain in NisB › Lant_dehydr_C 0.63 47.0 3.70e-01 98.0% 37.6%
4443042 304.5.1.10 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CBD_PlyG 0.63 52.0 4.91e-01 100.0% 76.9%
4961270 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.62 51.0 4.06e-01 94.0% 44.8%
3739576 327.11.2.27 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_Vigilin 0.60 45.0 4.42e-01 92.0% 78.2%
4487383 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.60 48.0 3.80e-01 92.0% 41.8%
3632364 603.1.1.120 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DUF846 0.59 44.0 3.19e-01 86.0% 60.6%
3772559 304.159.1.3 a+b two layers › Alpha-beta plaits › Alpha-beta plait domain in NisB › Alpha-beta plait domain in NisB › KH_Vigilin 0.59 48.0 3.71e-01 100.0% 41.5%
4358890 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.59 48.0 3.80e-01 96.0% 42.6%
4153244 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.59 45.0 4.11e-01 98.0% 61.4%
5042462 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.59 39.0 2.77e-01 70.0% 20.6%
5033035 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 41.0 3.25e-01 78.0% 33.1%
4516909 213.1.1.8 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › HlyC 0.58 46.0 3.29e-01 92.0% 52.1%
4950547 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.57 39.0 3.24e-01 74.0% 37.9%
4995222 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.57 43.0 4.02e-01 94.0% 69.3%
4980445 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 45.0 3.43e-01 100.0% 33.1%
4998735 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 46.0 3.34e-01 100.0% 32.6%
5031648 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.57 39.0 2.80e-01 74.0% 21.8%
3218069 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.57 47.0 4.43e-01 100.0% 76.9%
4672256 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.57 46.0 3.66e-01 96.0% 44.3%
5003874 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.57 46.0 3.68e-01 100.0% 47.5%
4014683 101.1.2.24 alpha arrays › HTH › HTH › winged helix domain › MAGE 0.57 46.0 3.48e-01 94.0% 40.0%
5041543 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.56 41.0 3.13e-01 84.0% 30.0%
4500042 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.56 47.0 2.74e-01 98.0% 17.9%
4018584 6155.1.1.15 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › DUF846 0.56 45.0 3.33e-01 98.0% 32.0%
None 0.56 48.0 2.66e-01 100.0% 30.4%
5052491 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.56 39.0 2.68e-01 74.0% 18.9%
3875763 3095.1.1.1 extended segments › E-cadherin › E-cadherin › E-cadherin › CADH_Y-type_LIR 0.56 38.0 3.44e-01 74.0% 60.0%
3994884 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.55 46.0 2.91e-01 100.0% 57.1%
5027566 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 43.0 3.80e-01 100.0% 56.5%
3777742 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.55 46.0 2.79e-01 100.0% 27.3%
4466102 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.55 38.0 2.69e-01 74.0% 21.8%
4582873 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.55 45.0 4.16e-01 100.0% 80.0%
4344487 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.55 38.0 2.72e-01 74.0% 21.8%
5022036 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 39.0 2.99e-01 78.0% 28.9%
4507638 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.55 38.0 2.73e-01 74.0% 21.8%
4981949 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 41.0 3.62e-01 86.0% 55.0%
5050596 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.54 41.0 3.84e-01 98.0% 64.3%
4561147 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.54 37.0 2.84e-01 74.0% 28.1%
3698196 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.54 43.0 3.73e-01 98.0% 56.7%
3641694 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.53 42.0 3.47e-01 96.0% 47.6%
3921243 2004.1.1.433 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.53 44.0 2.49e-01 100.0% 16.1%
164542 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.53 41.0 3.39e-01 98.0% 44.3%
5011468 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.53 38.0 2.95e-01 78.0% 30.4%
5049862 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 35.0 2.43e-01 98.0% 19.4%
3621671 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.53 44.0 2.72e-01 100.0% 59.7%
3277197 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.53 35.0 2.93e-01 70.0% 75.8%
2391543 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.52 36.0 2.51e-01 76.0% 21.8%
5040519 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 39.0 2.59e-01 90.0% 20.4%
4456198 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 37.0 2.61e-01 80.0% 22.7%
3939245 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.51 42.0 2.60e-01 100.0% 58.9%
4169399 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.50 39.0 3.58e-01 100.0% 75.9%