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MZ079855.1__QXN67603.1__X__00119

Bact-Vir

MZ079855.1__QXN67603.1__X__00119

Identity

Accession:
MZ079855 ↗
Kingdom:
phage

Quality

80.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Sugarlandvirus› Klebsiella_phage_vB_Kpn_3

TaxID: 2836075

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-84
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07486.18 best Hydrolase_2 57.1 3.80e-15 74.6% 41.3%
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4f55A01 1.10.10.2520 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Cell wall hydrolase SleB, domain 1 0.91 81.0 7.39e-01 98.4% 75.0%
7e84A03 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 43.0 3.46e-01 71.4% 61.8%
6cy5A01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.62 47.0 4.23e-01 84.1% 59.6%
7kypB01 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.61 54.0 3.51e-01 100.0% 57.8%
5e9hB01 1.10.10.850 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.60 45.0 3.75e-01 90.5% 45.1%
1jwjA01 3.90.340.10 Alpha Beta › Alpha-Beta Complex › Nitric Oxide Synthase; Chain A, domain 1 › Nitric Oxide Synthase; Chain A, domain 1 0.59 48.0 3.62e-01 100.0% 34.9%
1zk8B02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 41.0 3.25e-01 73.0% 79.5%
2euiA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 48.0 3.80e-01 95.2% 85.7%
2qgsB01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.58 48.0 4.41e-01 100.0% 75.0%
1q5nA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.58 48.0 4.53e-01 98.4% 76.5%
4p32B00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 46.0 3.18e-01 92.1% 31.3%
4fzwA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.57 38.0 3.99e-01 71.4% 100.0%
4griA04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.56 41.0 4.35e-01 82.5% 94.3%
1icrA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.55 45.0 3.14e-01 92.1% 28.2%
2p6vA00 1.20.120.1110 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › TAFH/NHR1 domain 0.55 43.0 3.83e-01 92.1% 57.7%
1j09A04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.55 35.0 3.75e-01 81.0% 85.4%
4gltA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 37.0 3.07e-01 74.6% 39.5%
3ousA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 43.0 3.93e-01 92.1% 65.9%
8ctsB01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 44.0 3.93e-01 88.9% 63.2%
3ckdA02 1.20.58.360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines 0.54 42.0 3.48e-01 92.1% 45.2%
1rp3G02 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.53 43.0 3.42e-01 95.2% 65.5%
4gx0A01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 39.0 3.43e-01 98.4% 51.5%
3q23A04 6.10.140.1370 Special › Helix non-globular › Helix Hairpins › 0.51 38.0 3.45e-01 82.5% 72.5%
3um7B01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 41.0 3.57e-01 88.9% 58.8%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
185732 3374.1.1.2 ↗ a+b complex topology › spore cortex-lytic enzyme catalytic domain › spore cortex-lytic enzyme catalytic domain › spore cortex-lytic enzyme catalytic domain › Hydrolase_2 0.91 81.0 6.24e-01 98.4% 46.9%
4983650 5065.1.1.3 ↗ alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 0.71 58.0 3.88e-01 90.5% 24.6%
3724273 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.65 48.0 4.45e-01 90.5% 61.2%
3650978 108.1.1.27 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6 0.64 55.0 4.78e-01 100.0% 71.0%
3219940 103.4.1.0 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.64 49.0 5.19e-01 87.3% 100.0%
3391169 103.4.1.25 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › PF27628 0.63 53.0 5.18e-01 95.2% 87.1%
3313678 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 47.0 3.69e-01 85.7% 38.6%
4015166 142.1.1.34 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › DUF2293 0.61 47.0 4.13e-01 87.3% 56.0%
3510165 102.1.3.9 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain › DZF_C 0.59 49.0 3.91e-01 98.4% 82.1%
3519127 4979.2.1.1 ↗ alpha arrays › C-terminal domain of Hypothetical protein MPN330-like › XRN2-binding domain (XTBD) › XRN2-binding domain (XTBD) › XTBD 0.57 45.0 4.22e-01 90.5% 68.8%
3944009 7510.1.1.2 ↗ a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › PTA_PTB 0.57 47.0 3.48e-01 93.7% 86.3%
4025792 223.2.1.3 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.57 47.0 3.56e-01 93.7% 39.5%
3285620 4953.1.1.2 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ADSL_C 0.55 45.0 4.46e-01 98.4% 88.6%
3632 4218.1.1.1 ↗ alpha bundles › TAFH domain-like › TAFH domain-like › TAFH domain-like › TAFH 0.55 43.0 3.83e-01 92.1% 57.7%
1036939 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.53 41.0 3.69e-01 98.4% 58.2%
2474880 397.7.1.0 ↗ few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 0.53 34.0 3.67e-01 71.4% 85.7%
3819438 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.53 41.0 3.48e-01 88.9% 51.4%
5055153 3290.1.1.0 ↗ alpha complex topology › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B 0.52 40.0 3.71e-01 95.2% 65.0%
3789887 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.51 42.0 3.19e-01 88.9% 38.6%
3742525 4156.1.1.0 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like 0.51 38.0 3.26e-01 92.1% 48.2%