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MZ089737.1__QVJ13181.1__X__00021

Bact-Vir

MZ089737.1__QVJ13181.1__X__00021

Identity

Accession:
MZ089737 ↗
Kingdom:
phage

Quality

76.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_PSA28

TaxID: 2833440

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-66
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.78 53.0 5.18e-01 70.3% 94.1%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 55.0 5.32e-01 75.0% 88.6%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 53.0 5.25e-01 75.0% 75.0%
1s1nA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 50.0 5.18e-01 73.4% 95.0%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 50.0 5.12e-01 73.4% 87.1%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.71 54.0 5.83e-01 84.4% 96.3%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.69 46.0 5.03e-01 73.4% 88.0%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 46.0 4.93e-01 70.3% 89.1%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.68 44.0 4.83e-01 73.4% 86.0%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 49.0 4.50e-01 78.1% 69.1%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 46.0 4.95e-01 76.6% 92.7%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 53.0 5.13e-01 90.6% 88.7%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 53.0 5.09e-01 90.6% 88.9%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.63 44.0 4.18e-01 75.0% 71.4%
3pfsB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 52.0 4.14e-01 93.8% 70.0%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 40.0 3.90e-01 85.9% 61.6%
3pnnA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.59 50.0 3.32e-01 100.0% 33.2%
2mamA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 53.0 4.33e-01 100.0% 87.3%
1y13A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.56 44.0 3.36e-01 89.1% 83.4%
3h27A00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.55 42.0 2.60e-01 84.4% 59.0%
4gnxA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 44.0 3.71e-01 87.5% 91.7%
4k7zA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 44.0 3.14e-01 98.4% 90.2%
1h6vA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 45.0 3.15e-01 100.0% 95.7%
2ch5B02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 42.0 3.09e-01 96.9% 30.0%
7s3lA01 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.51 39.0 2.95e-01 84.4% 58.8%
2pulB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 37.0 3.32e-01 78.1% 94.6%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3862126 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.80 53.0 5.51e-01 75.0% 73.3%
4024411 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 52.0 5.58e-01 70.3% 78.2%
3598284 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 53.0 5.66e-01 75.0% 80.0%
3485745 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.79 53.0 5.51e-01 70.3% 98.3%
3998022 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.76 53.0 5.73e-01 75.0% 85.5%
3235419 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 54.0 5.60e-01 75.0% 96.7%
3514867 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.75 61.0 5.84e-01 89.1% 90.7%
3518287 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.74 53.0 4.30e-01 75.0% 54.8%
4862202 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.74 52.0 5.91e-01 73.4% 100.0%
1145920 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.73 52.0 4.77e-01 75.0% 57.8%
4218142 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.73 54.0 4.67e-01 79.7% 52.0%
3326980 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.72 56.0 5.79e-01 84.4% 90.0%
3964733 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 55.0 5.88e-01 81.2% 98.2%
3649741 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.72 53.0 5.02e-01 81.2% 66.7%
3472332 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 49.0 5.20e-01 71.9% 87.3%
3443078 4.1.1.330 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.71 50.0 3.63e-01 75.0% 29.7%
4882420 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.70 53.0 5.81e-01 79.7% 100.0%
3636812 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.70 49.0 4.93e-01 73.4% 90.8%
3920026 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.70 62.0 4.32e-01 100.0% 31.0%
4252954 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 48.0 4.75e-01 75.0% 77.1%
3563220 4.1.1.220 ↗ beta barrels › SH3 › SH3 › SH3 › BAHCC1-like_Tudor 0.68 48.0 4.46e-01 73.4% 70.0%
5000741 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.68 48.0 4.78e-01 73.4% 72.3%
4888987 4.1.1.6 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.67 53.0 5.24e-01 85.9% 88.4%
3574613 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.67 59.0 5.02e-01 95.3% 69.0%
3413864 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.67 60.0 4.41e-01 100.0% 83.0%
3428486 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.66 59.0 5.52e-01 100.0% 81.2%
3411858 4.1.1.456 ↗ beta barrels › SH3 › SH3 › SH3 › BAH, BAHCC1-like_Tudor, SH3_TNRC18 0.66 50.0 2.99e-01 79.7% 16.4%
None — 0.66 59.0 3.20e-01 100.0% 50.9%
3616769 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.66 53.0 4.64e-01 87.5% 62.1%
3597255 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 53.0 4.80e-01 87.5% 72.9%
4271974 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.65 55.0 5.51e-01 90.6% 90.6%
4418620 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.65 58.0 3.19e-01 100.0% 64.1%
3775592 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.65 58.0 3.10e-01 100.0% 42.7%
3165077 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.65 56.0 5.45e-01 92.2% 97.1%
5029405 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.65 45.0 4.82e-01 73.4% 89.1%
5051148 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 46.0 4.73e-01 92.2% 80.0%
3480350 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 57.0 5.74e-01 98.4% 96.9%
3903213 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.64 57.0 4.13e-01 100.0% 37.7%
4139090 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.63 47.0 4.99e-01 79.7% 92.7%
4573193 2005.1.1.17 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f 0.62 48.0 3.03e-01 84.4% 33.4%
3967108 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.61 36.0 4.35e-01 90.6% 95.0%
5063004 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 51.0 5.15e-01 100.0% 98.5%
5752 230.1.1.3 ↗ a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS 0.56 45.0 3.38e-01 89.1% 83.4%
3964178 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.54 39.0 3.21e-01 81.2% 53.3%
4948250 4.1.1.301 ↗ beta barrels › SH3 › SH3 › SH3 › MJ1316 0.52 45.0 4.54e-01 100.0% 100.0%
D2 high residues 124-193
PDB
Domain cluster: representative
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3943642 375.1.1.130 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_Tnp_IS1 0.59 38.0 4.57e-01 72.9% 100.0%
3199389 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.52 35.0 2.44e-01 100.0% 18.5%
D3 high residues 205-297
PDB
Domain cluster: rep: MK203850.3__AZS06549.1__X__00046__D103-200