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MZ092003.1__QVQ56185.1__X__00028

Bact-Vir

MZ092003.1__QVQ56185.1__X__00028

Identity

Accession:
MZ092003 ↗
Kingdom:
phage

Quality

82.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Paenibacillus_phage_Pd_22F

TaxID: 2836077

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-71
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1k6kA00 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.65 45.0 3.51e-01 72.7% 90.8%
1tafB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.62 42.0 4.23e-01 74.2% 68.6%
1gakA00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.58 41.0 3.24e-01 74.2% 65.7%
2z7bA00 3.40.225.10 Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain 0.56 46.0 3.30e-01 98.5% 84.0%
1f45B00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.55 38.0 3.03e-01 80.3% 36.1%
1kx5A00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.55 39.0 3.28e-01 80.3% 39.3%
1h99A02 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.55 37.0 3.27e-01 71.2% 47.2%
3lynB00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.54 37.0 3.12e-01 72.7% 70.2%
7m2wE01 1.20.120.1900 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Gamma-tubulin complex, C-terminal domain 0.54 45.0 2.99e-01 98.5% 57.7%
3rrkA02 1.20.1460.20 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › 0.52 40.0 2.98e-01 81.8% 83.2%
1y1uA01 1.20.1050.20 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › STAT transcription factor, all-alpha domain 0.51 41.0 2.98e-01 89.4% 85.1%
7miqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.50 30.0 2.60e-01 75.8% 32.7%
4b6iA00 1.20.120.1620 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.50 36.0 3.24e-01 78.8% 71.0%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5058151 6026.1.1.0 ↗ alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain 0.72 37.0 3.74e-01 86.4% 50.8%
5002539 101.1.2.906 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF1016_N 0.69 38.0 3.28e-01 97.0% 34.3%
3347379 3470.1.1.26 ↗ extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › DUF543 0.66 39.0 3.96e-01 80.3% 60.0%
2994519 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.65 48.0 4.34e-01 81.8% 55.8%
4114183 1075.3.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 0.65 47.0 3.30e-01 78.8% 23.4%
4950231 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.65 45.0 4.12e-01 75.8% 62.1%
4046452 101.1.1.102 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Lin-8 0.64 44.0 3.90e-01 75.8% 48.0%
3734144 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.60 44.0 3.41e-01 80.3% 85.2%
3547935 3204.1.1.0 ↗ extended segments › N-terminal regulatory segment of carnitine palmitoyltransferase 1A › N-terminal regulatory segment of carnitine palmitoyltransferase 1A › N-terminal regulatory segment of carnitine palmitoyltransferase 1A 0.59 45.0 3.93e-01 86.4% 54.5%
3619546 3712.1.1.0 ↗ a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 0.59 40.0 4.10e-01 74.2% 73.8%
None — 0.57 46.0 3.39e-01 90.9% 70.0%
5053903 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 38.0 3.28e-01 77.3% 40.0%
3940195 314.1.1.6 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB 0.56 40.0 2.74e-01 78.8% 72.9%
3610347 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.55 38.0 3.54e-01 71.2% 64.7%
3493779 309.1.1.8 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_M 0.54 41.0 2.76e-01 80.3% 92.1%
3736834 105.1.1.0 ↗ alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain 0.54 48.0 4.24e-01 98.5% 76.8%
4928237 131.1.1.0 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.53 36.0 2.79e-01 71.2% 38.8%
3570202 601.4.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.53 39.0 3.47e-01 80.3% 82.0%
5029231 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.52 39.0 2.33e-01 80.3% 45.5%
4939237 4009.1.1.0 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.52 36.0 3.67e-01 74.2% 92.3%
3643488 192.15.1.11 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › CemA 0.52 35.0 3.49e-01 77.3% 65.3%
None — 0.51 36.0 2.74e-01 77.3% 92.4%