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MZ127829.1__QVJ07684.1__X__00028

Bact-Vir

MZ127829.1__QVJ07684.1__X__00028

Identity

Accession:
MZ127829 ↗
Kingdom:
phage

Quality

80.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sphingopyxis_phage_VSN-002

TaxID: 2835890

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-60
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.71 62.0 4.45e-01 100.0% 50.3%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.70 61.0 5.62e-01 100.0% 81.8%
2btwA00 3.90.70.30 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Phytochelatin synthase, N-terminal domain 0.65 56.0 3.90e-01 100.0% 44.3%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.64 52.0 4.99e-01 91.4% 100.0%
3q39B02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.62 53.0 4.36e-01 98.3% 99.1%
4rudA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.62 40.0 4.00e-01 87.9% 63.8%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 49.0 4.01e-01 89.7% 88.2%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 48.0 4.67e-01 94.8% 79.7%
6r3wA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 49.0 3.67e-01 93.1% 93.2%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 48.0 4.45e-01 89.7% 93.4%
4qv2A02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.61 51.0 4.15e-01 98.3% 94.1%
3zoqC00 6.20.250.30 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.61 46.0 4.82e-01 87.9% 92.5%
1yoaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 46.0 3.45e-01 86.2% 85.5%
4d0qA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 51.0 3.81e-01 100.0% 95.0%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 50.0 4.73e-01 100.0% 97.2%
3dnhA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 51.0 3.82e-01 98.3% 44.4%
2iabA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 50.0 3.85e-01 98.3% 46.2%
5gv0A00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.59 46.0 3.45e-01 89.7% 74.1%
2zl7A02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.58 50.0 4.38e-01 100.0% 97.8%
2d7eA01 3.40.1440.60 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain 0.58 44.0 3.90e-01 100.0% 54.4%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 49.0 3.79e-01 98.3% 53.5%
6mv2A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 48.0 4.09e-01 98.3% 74.3%
3lq6A02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.58 49.0 4.04e-01 100.0% 97.4%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 48.0 4.16e-01 100.0% 97.0%
6euaA01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.57 48.0 3.78e-01 100.0% 69.1%
4d8mA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 48.0 3.53e-01 100.0% 54.1%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 47.0 3.97e-01 98.3% 99.0%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.56 46.0 4.27e-01 96.6% 100.0%
4aw7A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 46.0 3.76e-01 100.0% 65.3%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 44.0 3.17e-01 98.3% 34.8%
3besR02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 45.0 3.77e-01 100.0% 82.9%
1zvfB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 45.0 3.36e-01 98.3% 48.2%
2v5yA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.73e-01 98.3% 80.4%
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.52 45.0 3.42e-01 100.0% 45.5%
2ebfX01 3.10.670.10 Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. 0.52 44.0 3.15e-01 100.0% 80.3%
1nc7A00 2.60.290.11 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like 0.52 43.0 3.58e-01 100.0% 73.3%
5jpnB04 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.52e-01 100.0% 70.2%
1s3rA04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.51 43.0 3.58e-01 98.3% 56.8%
3fn9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 41.0 3.33e-01 96.6% 87.5%
5l10B00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.50 36.0 2.74e-01 81.0% 50.0%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5080336 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 59.0 5.76e-01 100.0% 95.3%
4625654 4.1.1.445 ↗ beta barrels › SH3 › SH3 › SH3 › Spore_GerQ 0.67 58.0 5.38e-01 100.0% 88.0%
4988761 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.67 56.0 4.98e-01 100.0% 87.8%
5065295 1.1.5.17 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.67 57.0 4.22e-01 100.0% 96.2%
3713334 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.65 54.0 5.38e-01 93.1% 100.0%
3710913 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 56.0 4.52e-01 100.0% 75.8%
3469033 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.65 54.0 3.60e-01 96.6% 28.8%
3185321 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.65 56.0 5.16e-01 98.3% 92.0%
3704395 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 55.0 5.35e-01 96.6% 96.9%
2755606 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.64 53.0 3.68e-01 100.0% 31.3%
3210897 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 54.0 4.89e-01 100.0% 84.7%
2978978 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.64 53.0 4.96e-01 96.6% 90.7%
3957374 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.62 52.0 4.93e-01 98.3% 95.7%
3342793 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.61 51.0 3.66e-01 96.6% 37.9%
4430197 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.61 38.0 3.92e-01 87.9% 67.3%
3601070 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 49.0 4.76e-01 91.4% 100.0%
3413652 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.60 49.0 4.86e-01 91.4% 85.0%
4987744 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.60 50.0 3.93e-01 98.3% 45.2%
3928136 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 50.0 4.96e-01 96.6% 100.0%
3712782 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 51.0 4.63e-01 98.3% 71.2%
3645395 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.59 48.0 4.45e-01 96.6% 97.5%
4518867 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.59 48.0 4.25e-01 100.0% 97.9%
3608562 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 49.0 3.67e-01 98.3% 62.9%
3931783 1.1.7.41 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom 0.58 48.0 4.21e-01 96.6% 96.8%
3520654 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.58 48.0 3.71e-01 100.0% 70.0%
4872941 10.2.1.43 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Calici_coat_C 0.58 47.0 3.89e-01 98.3% 90.8%
3636807 1.1.5.30 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_oxase_2 0.57 48.0 3.10e-01 96.6% 40.0%
4271087 4.1.1.444 ↗ beta barrels › SH3 › SH3 › SH3 › SplA 0.57 44.0 4.28e-01 93.1% 80.0%
3177726 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 42.0 3.14e-01 89.7% 51.4%
4851578 382.1.1.7 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_cobra-type 0.56 38.0 3.71e-01 87.9% 63.1%
4524884 868.1.1.2 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA_triPase 0.56 43.0 2.77e-01 86.2% 26.9%
4452137 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.56 45.0 3.61e-01 98.3% 94.1%
3707711 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 47.0 2.84e-01 100.0% 21.3%
3901599 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 46.0 3.90e-01 100.0% 76.2%
3545090 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.54 43.0 3.09e-01 100.0% 30.0%
3821082 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.54 42.0 3.64e-01 87.9% 56.8%
4324528 284.1.3.1 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.53 41.0 3.83e-01 86.2% 86.7%
1883531 11.15.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Perfringolysin O beta sandwich domain › Perfringolysin O beta sandwich domain › Thiol_cytolys_C 0.53 46.0 3.73e-01 98.3% 57.3%
3200737 2003.1.5.73 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.52 39.0 2.67e-01 82.8% 90.6%
3893019 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 45.0 3.81e-01 100.0% 86.0%
7410 219.1.1.64 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PMT_C3 0.51 43.0 3.09e-01 100.0% 79.7%
3712543 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.51 41.0 3.48e-01 94.8% 57.1%
3565481 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.50 44.0 3.65e-01 100.0% 82.9%
4664972 299.1.1.0 ↗ a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain 0.50 42.0 3.21e-01 96.6% 70.7%