←Back to structures

MZ127829.1__QVJ07701.1__X__00045

Bact-Vir

MZ127829.1__QVJ07701.1__X__00045

Identity

Accession:
MZ127829 ↗
Kingdom:
phage

Quality

96.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sphingopyxis_phage_VSN-002

TaxID: 2835890

Cluster

View cluster (14 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-125
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kzbA00 2.60.40.2830 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 44.0 4.28e-01 99.0% 65.8%
3votB02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.60 53.0 3.81e-01 96.2% 47.8%
1a9xA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.56 50.0 3.98e-01 100.0% 77.4%
1kv3A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 3.84e-01 83.8% 95.7%
5mw5A01 2.60.40.3510 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 44.0 3.98e-01 100.0% 80.1%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4928608 3899.1.1.0 ↗ beta complex topology › Baseplate structural protein gp8 › Baseplate structural protein gp8 › Baseplate structural protein gp8 0.68 56.0 4.93e-01 100.0% 60.4%
3484478 4.1.1.99 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_10 0.58 23.0 2.96e-01 94.3% 58.3%
None — 0.56 51.0 3.21e-01 100.0% 76.9%
4926989 206.1.3.10 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › CPSase_L_D2 0.56 50.0 3.15e-01 100.0% 69.5%
5082922 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.55 49.0 3.04e-01 100.0% 26.0%
4960051 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.55 43.0 3.73e-01 100.0% 52.3%
None — 0.53 46.0 2.97e-01 99.0% 29.2%
5060903 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 40.0 3.61e-01 81.9% 86.7%
3796287 11.1.4.7 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › TTR-52 0.52 44.0 4.55e-01 100.0% 98.0%