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MZ188976.1__QVJ82428.1__JK004_71__00071

Bact-Vir

MZ188976.1__QVJ82428.1__JK004_71__00071

Identity

Accession:
MZ188976 ↗
Kingdom:
phage

Quality

91.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Cronobacter_phage_JK004

TaxID: 2835891

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-79
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2j3tD01 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.74 55.0 4.28e-01 86.4% 38.8%
1skoB00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.73 51.0 4.14e-01 80.3% 41.4%
3fewX02 3.30.1310.40 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › 0.72 41.0 3.62e-01 83.3% 40.0%
1wp0A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.68 46.0 3.49e-01 71.2% 85.6%
1h8mA00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.67 50.0 3.91e-01 81.8% 37.9%
1ifqB00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.67 49.0 3.91e-01 80.3% 39.8%
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.64 44.0 3.71e-01 75.8% 41.5%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 48.0 3.49e-01 81.8% 62.3%
2b7jB01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.63 43.0 3.22e-01 71.2% 83.2%
1mgtA01 3.30.160.70 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain 0.62 44.0 4.00e-01 77.3% 55.7%
2dmwA01 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.61 47.0 3.93e-01 86.4% 47.4%
3vz9B00 3.30.457.50 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 0.61 44.0 3.80e-01 77.3% 51.5%
4o5fA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.61 43.0 3.42e-01 74.2% 42.5%
2ls5A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.60 43.0 3.26e-01 75.8% 76.1%
3lxuX01 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.60 48.0 3.08e-01 87.9% 35.4%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 43.0 3.49e-01 74.2% 79.3%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 39.0 3.49e-01 71.2% 83.3%
1mpgA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.55 37.0 3.21e-01 72.7% 86.6%
1o97D01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.53 36.0 2.67e-01 71.2% 43.4%
3a0oA03 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 36.0 2.49e-01 72.7% 88.3%
2bmxB01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 36.0 2.82e-01 74.2% 73.3%
3cynB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 43.0 3.19e-01 90.9% 72.8%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3834262 223.2.1.15 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Longin 0.78 62.0 4.76e-01 90.9% 40.0%
5079671 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.77 58.0 4.83e-01 81.8% 48.2%
4978622 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.75 56.0 4.79e-01 83.3% 52.0%
4498285 245.2.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.75 51.0 4.49e-01 72.7% 49.5%
3903295 223.2.1.33 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.74 56.0 4.44e-01 86.4% 42.4%
5046979 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.73 54.0 4.51e-01 81.8% 47.3%
3628286 223.2.1.33 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.72 57.0 4.48e-01 92.4% 42.3%
5076068 223.2.1.3 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.72 54.0 4.63e-01 80.3% 54.3%
5074649 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.71 50.0 4.06e-01 80.3% 39.2%
5051623 223.2.1.20 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 0.70 51.0 4.05e-01 83.3% 39.2%
4944878 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.70 51.0 4.06e-01 80.3% 39.2%
4947581 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 53.0 4.45e-01 86.4% 49.1%
5072591 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 53.0 4.37e-01 86.4% 47.0%
4297945 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.69 49.0 5.23e-01 74.2% 98.2%
3461881 223.2.1.15 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Longin 0.69 50.0 4.06e-01 80.3% 40.8%
4139864 245.2.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.69 53.0 4.61e-01 81.8% 65.3%
3311849 2485.1.1.35 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › MRP_L53 0.68 55.0 4.52e-01 86.4% 80.9%
5049789 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 51.0 4.10e-01 86.4% 43.2%
4280539 109.21.1.8 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › WD40 0.66 41.0 2.28e-01 84.8% 5.4%
3255285 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.65 49.0 4.04e-01 86.4% 43.9%
4944469 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 50.0 3.99e-01 86.4% 42.3%
4978284 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 48.0 4.01e-01 86.4% 45.0%
3585813 220.1.1.50 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 0.64 43.0 4.39e-01 81.8% 70.8%
3735753 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 54.0 3.01e-01 92.4% 7.7%
4140296 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.64 44.0 3.37e-01 75.8% 33.6%
5051614 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 50.0 4.03e-01 86.4% 44.8%
3487488 220.1.1.37 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_13 0.64 52.0 3.93e-01 87.9% 86.0%
4927398 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.63 45.0 3.37e-01 74.2% 72.3%
3702049 2485.1.1.12 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › SCO1-SenC 0.63 52.0 3.98e-01 90.9% 77.3%
4996048 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 47.0 3.84e-01 86.4% 42.3%
2124201 220.3.1.2 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 0.62 36.0 2.80e-01 72.7% 23.4%
5049349 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 44.0 3.39e-01 80.3% 32.9%
4093535 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 45.0 3.63e-01 90.9% 40.8%
3360324 2485.1.1.12 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › SCO1-SenC 0.60 41.0 3.36e-01 71.2% 87.7%
3921576 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 45.0 3.53e-01 83.3% 73.6%
5022868 244.4.1.2 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › NiFeSe_Hases 0.58 45.0 4.14e-01 84.8% 65.9%
4436313 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.58 39.0 3.61e-01 71.2% 63.3%
3510425 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.56 41.0 3.12e-01 77.3% 70.3%
5046009 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 42.0 3.50e-01 86.4% 43.1%
3490881 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.55 45.0 3.64e-01 87.9% 50.0%
3226497 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.54 37.0 3.06e-01 71.2% 40.0%
4937908 220.1.1.87 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.54 45.0 3.44e-01 90.9% 76.5%
3627778 220.1.1.64 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C1_MyoVII 0.54 41.0 3.57e-01 81.8% 92.0%
4247062 2002.1.1.25 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HMGL-like 0.54 39.0 2.44e-01 77.3% 87.9%
3604410 2004.1.1.293 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.53 41.0 2.96e-01 81.8% 77.2%
4981192 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 45.0 3.11e-01 98.5% 72.5%
3810543 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.52 39.0 3.30e-01 78.8% 97.3%
3482713 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 38.0 3.04e-01 80.3% 80.0%