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MZ188976.1__QVJ82430.1__JK004_73__00073

Bact-Vir

MZ188976.1__QVJ82430.1__JK004_73__00073

Identity

Accession:
MZ188976 ↗
Kingdom:
phage

Quality

71.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Cronobacter_phage_JK004

TaxID: 2835891

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-99
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2n00A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.59 47.0 4.75e-01 84.7% 95.8%
5ulcX00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.59 48.0 4.47e-01 87.8% 78.7%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.58 44.0 4.14e-01 79.6% 94.9%
2qqyA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.57 52.0 4.64e-01 100.0% 78.3%
3t6gB00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.55 39.0 3.54e-01 74.5% 59.0%
3jsbA01 1.20.1440.300 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain 0.55 39.0 4.25e-01 85.7% 91.4%
2nscA01 3.30.70.1050 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain 0.53 29.0 3.16e-01 85.7% 62.8%
3ajmB02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.53 42.0 3.75e-01 82.7% 69.9%
4nreA02 1.20.245.10 Mainly Alpha › Up-down Bundle › Lipoxygenase-1; domain 5 › Lipoxygenase-1; Domain 5 0.53 44.0 2.94e-01 94.9% 62.2%
6wnta01 6.10.20.140 Special › Helix non-globular › Arc Repressor Mutant, subunit A › 50S ribosomal protein L1; Chain A, Domain 1 0.52 29.0 3.49e-01 74.5% 82.5%
4c98A02 3.30.70.1900 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 35.0 3.18e-01 71.4% 48.9%
7crnA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 37.0 2.83e-01 78.6% 65.8%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5070824 140.1.1.7 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_2 0.64 38.0 3.33e-01 79.6% 40.7%
3603512 633.5.1.1 ↗ alpha bundles › Bromodomain-like › LemA-like › LemA-like › LemA 0.61 49.0 4.29e-01 85.7% 63.4%
3217390 633.1.1.1 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.58 47.0 4.23e-01 88.8% 73.3%
3754748 604.1.1.167 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › AMH_N 0.57 41.0 4.05e-01 73.5% 100.0%
3613222 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.57 44.0 3.46e-01 84.7% 69.8%
4602904 6091.1.1.0 ↗ alpha bundles › Helical bundle domain in Endo-alpha-N-acetylgalactosaminidase › Helical bundle domain in Endo-alpha-N-acetylgalactosaminidase › Helical bundle domain in Endo-alpha-N-acetylgalactosaminidase 0.57 39.0 4.11e-01 70.4% 95.3%
4368947 141.1.1.6 ↗ alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › HEPPP_synt_1 0.55 48.0 3.58e-01 95.9% 43.2%
3471024 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.53 38.0 3.60e-01 77.6% 61.7%
3716548 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.53 40.0 3.94e-01 94.9% 77.1%
4025398 633.1.1.1 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.52 46.0 4.34e-01 100.0% 89.2%