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MZ188976.1__QVJ82440.1__JK004_83__00083
Bact-VirMZ188976.1__QVJ82440.1__JK004_83__00083
Identity
- Accession:
- MZ188976 ↗
- Kingdom:
- phage
Quality
69.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-48
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2i9iA00 | 3.30.160.180 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Putative neuraminyllactose-binding hemagglutinin homolog like domain | 0.79 | 56.0 | 3.54e-01 | 76.1% | 19.5% |
| 4eadA02 | 3.40.1030.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain | 0.75 | 63.0 | 3.98e-01 | 95.7% | 58.5% |
| 2bxhA06 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.75 | 63.0 | 5.52e-01 | 93.5% | 88.1% |
| 1nj1A02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.73 | 53.0 | 4.10e-01 | 78.3% | 39.4% |
| 4wnyA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.72 | 62.0 | 4.49e-01 | 97.8% | 49.2% |
| 1pyoC00 | 3.40.50.1460 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.71 | 53.0 | 3.63e-01 | 80.4% | 46.6% |
| 2awnC01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 53.0 | 3.61e-01 | 100.0% | 49.5% |
| 1ufhA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.65 | 54.0 | 3.88e-01 | 100.0% | 49.0% |
| 1lwdA00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.65 | 53.0 | 3.16e-01 | 100.0% | 34.1% |
| 7wkqB01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.64 | 53.0 | 3.55e-01 | 100.0% | 84.2% |
| 4rk4A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.64 | 51.0 | 3.60e-01 | 89.1% | 29.6% |
| 3obwA03 | 3.30.1330.30 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 | 0.63 | 51.0 | 4.03e-01 | 93.5% | 50.0% |
| 2ozeA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 52.0 | 3.24e-01 | 100.0% | 71.8% |
| 1qhhD01 | 3.30.160.800 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.61 | 43.0 | 3.78e-01 | 78.3% | 59.2% |
| 2vedA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 52.0 | 3.31e-01 | 100.0% | 65.5% |
| 2rbgA00 | 3.40.50.11100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.61 | 41.0 | 3.20e-01 | 76.1% | 28.2% |
| 6acsA00 | 3.40.1180.10 | Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like | 0.60 | 53.0 | 3.38e-01 | 97.8% | 40.4% |
| 4c6rA00 | 3.40.50.10140 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Toll/interleukin-1 receptor homology (TIR) domain | 0.59 | 45.0 | 3.27e-01 | 93.5% | 80.2% |
| 16pkA02 | 3.40.50.1260 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate kinase, N-terminal domain | 0.59 | 50.0 | 3.29e-01 | 100.0% | 78.4% |
| 7paxA01 | 3.40.1180.10 | Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like | 0.58 | 50.0 | 3.11e-01 | 100.0% | 40.4% |
| 3bzcA03 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.57 | 46.0 | 3.52e-01 | 100.0% | 47.7% |
| 3ugsB00 | 3.40.1180.10 | Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like | 0.57 | 49.0 | 3.18e-01 | 97.8% | 43.8% |
| 7t85A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 46.0 | 3.29e-01 | 97.8% | 43.5% |
| 1lbqA02 | 3.40.50.1400 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 41.0 | 3.18e-01 | 100.0% | 37.4% |
| 1f75A00 | 3.40.1180.10 | Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like | 0.53 | 40.0 | 2.77e-01 | 97.8% | 35.9% |
| 3zxoA00 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.52 | 44.0 | 3.35e-01 | 100.0% | 67.2% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2095497 | 7523.1.1.4 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_3 | 0.72 | 50.0 | 4.20e-01 | 73.9% | 46.9% |
| 3342472 | 7568.1.1.4 ↗ | a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT_2 | 0.72 | 55.0 | 4.24e-01 | 87.0% | 80.0% |
| 3959101 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.71 | 57.0 | 4.13e-01 | 91.3% | 52.6% |
| 2485394 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.70 | 49.0 | 4.42e-01 | 73.9% | 58.5% |
| 3591494 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.70 | 51.0 | 3.23e-01 | 78.3% | 27.6% |
| 4985079 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.70 | 57.0 | 4.20e-01 | 97.8% | 40.7% |
| 4346987 | 2484.1.1.72 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › YqgF | 0.67 | 49.0 | 3.21e-01 | 78.3% | 19.0% |
| 3549043 | 2005.1.1.36 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › SLC12 | 0.67 | 58.0 | 3.97e-01 | 100.0% | 57.1% |
| 3959954 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.67 | 55.0 | 3.94e-01 | 100.0% | 57.4% |
| 4033726 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.66 | 55.0 | 3.60e-01 | 100.0% | 41.8% |
| 3958092 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.65 | 54.0 | 3.81e-01 | 100.0% | 35.6% |
| 3664605 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.65 | 53.0 | 3.68e-01 | 100.0% | 60.6% |
| 3946829 | 2004.1.1.308 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 | 0.64 | 53.0 | 4.41e-01 | 100.0% | 51.1% |
| 3507026 | 2498.2.1.1 ↗ | mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain › Glyco_hydro_20b | 0.64 | 51.0 | 3.53e-01 | 89.1% | 72.5% |
| 4943064 | 2003.1.1.385 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Succ_CoA_lig | 0.64 | 55.0 | 3.95e-01 | 100.0% | 85.0% |
| 4989686 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.63 | 52.0 | 3.58e-01 | 100.0% | 42.7% |
| 5010726 | 2007.2.3.15 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DUF488 | 0.62 | 52.0 | 3.53e-01 | 93.5% | 33.9% |
| 344699 | 2004.1.1.206 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_31 | 0.61 | 51.0 | 3.28e-01 | 100.0% | 65.0% |
| 3251874 | 7534.1.1.1 ↗ | a/b three-layered sandwiches › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Prenyltransf | 0.61 | 54.0 | 3.34e-01 | 100.0% | 41.2% |
| 3198790 | 2004.1.1.284 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › tRNA_lig_kinase | 0.60 | 43.0 | 2.83e-01 | 78.3% | 16.4% |
| 3987964 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.60 | 48.0 | 3.90e-01 | 97.8% | 46.0% |
| 5050382 | 2003.1.10.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain | 0.59 | 49.0 | 4.08e-01 | 100.0% | 90.0% |
| 3798806 | 7534.1.1.0 ↗ | a/b three-layered sandwiches › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase | 0.58 | 51.0 | 3.24e-01 | 100.0% | 47.0% |
| 3927910 | 4143.1.1.7 ↗ | a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › PF25904 | 0.53 | 43.0 | 3.53e-01 | 100.0% | 71.0% |
| 3941275 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.50 | 40.0 | 3.25e-01 | 100.0% | 79.0% |