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MZ231000.1__QYS24845.1__fNO16917154_0003__00003
Bact-VirMZ231000.1__QYS24845.1__fNO16917154_0003__00003
Identity
- Accession:
- MZ231000 ↗
- Kingdom:
- phage
Quality
73.4
mean pLDDT
Taxonomy
Abadenavirae›
Produgelaviricota›
Belvinaviricetes›
Vinavirales›
Corticoviridae›
Vibrio_phage_NO16-like_91-7-154
TaxID: 2863257
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 199-254_268-295_316-436
Domain cluster:
rep: NC_055055.1__YP_010084014.1__KMD55_gp11__00011__D125-284
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF23343.3 best | REP_ORF2-G2P | 32.9 | 8.80e-08 | 45.4% | 60.6% |
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6h8oA00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.75 | 35.0 | 5.11e-01 | 87.3% | 95.8% |
| 1zpvA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.75 | 33.0 | 5.09e-01 | 70.7% | 100.0% |
| 1u8sA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.74 | 32.0 | 5.01e-01 | 71.2% | 100.0% |
| 2lqjA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.73 | 34.0 | 5.00e-01 | 75.1% | 96.8% |
| 3c19A01 | 3.30.70.1380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transcriptional regulatory protein pf0864 domain like | 0.71 | 34.0 | 4.81e-01 | 72.7% | 93.9% |
| 1l2mA00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.71 | 37.0 | 4.85e-01 | 85.4% | 89.0% |
| 4pcqA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.70 | 31.0 | 4.71e-01 | 70.2% | 100.0% |
| 2hiyA01 | 3.30.70.1280 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SP0830-like domains | 0.68 | 30.0 | 4.56e-01 | 73.7% | 96.6% |
| 2nyiA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.68 | 32.0 | 4.69e-01 | 70.7% | 100.0% |
| 3dfeA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.68 | 29.0 | 4.52e-01 | 72.7% | 100.0% |
| 3n0vA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.68 | 30.0 | 4.47e-01 | 70.7% | 98.8% |
| 2cyyA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.67 | 31.0 | 4.43e-01 | 73.7% | 93.7% |
| 2gx8A02 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 32.0 | 4.40e-01 | 70.2% | 91.9% |
| 7c51A01 | 3.30.70.2970 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function (DUF541), domain 2 | 0.64 | 35.0 | 4.68e-01 | 71.2% | 98.2% |
| 3mgjA00 | 3.30.70.2690 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › LOR/SDH bifunctional enzyme, conserved domain | 0.63 | 31.0 | 4.47e-01 | 87.3% | 100.0% |
| 1pbuA00 | 3.30.70.1010 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Translation elongation factor EF1B, gamma chain, conserved domain | 0.62 | 43.0 | 4.73e-01 | 95.1% | 87.0% |
| 7o4xA01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 31.0 | 4.34e-01 | 86.8% | 100.0% |
| 4zmuA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.61 | 40.0 | 4.56e-01 | 87.3% | 87.1% |
| 1tz0B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 29.0 | 4.12e-01 | 71.7% | 95.9% |
| 7e6gA01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.60 | 39.0 | 4.50e-01 | 86.3% | 89.3% |
| 1mwqA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.59 | 31.0 | 4.19e-01 | 72.2% | 100.0% |
| 5k8mA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 37.0 | 4.58e-01 | 70.2% | 98.5% |
| 1m55A00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.58 | 47.0 | 4.89e-01 | 90.2% | 89.1% |
| 1ekrA00 | 3.30.70.640 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Molybdopterin cofactor biosynthesis C (MoaC) domain | 0.58 | 38.0 | 4.42e-01 | 74.6% | 91.6% |
| 2pgcC01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 29.0 | 4.03e-01 | 70.7% | 100.0% |
| 3pm9A03 | 3.30.70.2190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 34.0 | 4.28e-01 | 80.5% | 100.0% |
| 2cg8B02 | 3.30.70.560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK | 0.55 | 36.0 | 4.37e-01 | 77.6% | 100.0% |
| 2hzmG01 | 3.30.310.180 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.55 | 32.0 | 4.09e-01 | 75.6% | 99.1% |
| 2bvfA03 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.55 | 40.0 | 3.97e-01 | 88.8% | 72.4% |
| 4cyuA00 | 3.30.70.560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK | 0.54 | 39.0 | 4.48e-01 | 83.4% | 100.0% |
| 2iiiA00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.53 | 30.0 | 3.74e-01 | 71.2% | 91.7% |
| 2fbjH02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 19.0 | 2.97e-01 | 72.7% | 86.3% |
| 2petA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 26.0 | 3.38e-01 | 70.2% | 85.3% |
| 3vteA03 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.51 | 33.0 | 3.44e-01 | 88.3% | 70.8% |
| 6wl5A01 | 3.20.80.10 | Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain | 0.50 | 33.0 | 3.81e-01 | 96.1% | 90.6% |
| 4mlaA03 | 3.40.462.10 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain | 0.50 | 39.0 | 3.86e-01 | 86.8% | 74.9% |
| 3o6qA02 | 3.30.70.2720 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 22.0 | 2.86e-01 | 77.1% | 71.1% |
ECOD (58)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4959045 | 304.8.1.81 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › REP_ORF2-G2P | 0.76 | 55.0 | 6.36e-01 | 99.5% | 99.3% |
| 3970813 | 304.12.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 | 0.74 | 34.0 | 5.01e-01 | 71.7% | 95.7% |
| 4085092 | 304.12.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › MgtC_SapB_C | 0.73 | 35.0 | 5.12e-01 | 72.2% | 98.9% |
| 148700 | 304.12.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › MgtC_SapB_C | 0.73 | 34.0 | 5.00e-01 | 75.1% | 96.8% |
| 3677764 | 304.8.1.23 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Helitron_like_N | 0.73 | 49.0 | 5.90e-01 | 87.3% | 99.3% |
| 4932798 | 304.8.1.81 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › REP_ORF2-G2P | 0.72 | 57.0 | 6.15e-01 | 99.5% | 95.4% |
| 3970088 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.72 | 35.0 | 5.05e-01 | 72.7% | 100.0% |
| 5004030 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.72 | 35.0 | 5.01e-01 | 79.5% | 100.0% |
| 5043329 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.70 | 32.0 | 4.73e-01 | 74.6% | 100.0% |
| 4216562 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.69 | 32.0 | 4.76e-01 | 75.1% | 100.0% |
| 3897523 | 304.12.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 | 0.68 | 36.0 | 4.61e-01 | 76.1% | 87.5% |
| 5053336 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.67 | 32.0 | 4.54e-01 | 71.2% | 93.0% |
| 3924467 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.67 | 28.0 | 4.09e-01 | 86.8% | 86.7% |
| 5042689 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.66 | 35.0 | 4.79e-01 | 70.2% | 100.0% |
| 3232018 | 304.12.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 | 0.65 | 34.0 | 3.95e-01 | 70.2% | 69.0% |
| 3232695 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.65 | 33.0 | 4.49e-01 | 87.3% | 94.3% |
| 4007464 | 304.55.1.19 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Inovirus_Gp2 | 0.63 | 56.0 | 5.84e-01 | 94.6% | 100.0% |
| 3381094 | 304.8.1.64 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Helitron_like_N, REP_ORF2-G2P | 0.63 | 59.0 | 5.19e-01 | 100.0% | 85.0% |
| 4315665 | 304.8.1.91 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF1424 | 0.63 | 58.0 | 5.76e-01 | 99.5% | 94.8% |
| 3678063 | 304.28.1.10 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Helitron_like_N | 0.62 | 50.0 | 5.06e-01 | 83.4% | 95.1% |
| None | — | 0.61 | 57.0 | 5.39e-01 | 100.0% | 99.2% | |
| 3782679 | 304.44.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 | 0.60 | 34.0 | 3.41e-01 | 73.2% | 52.9% |
| 3678555 | 304.55.1.15 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Helitron_like_N | 0.59 | 44.0 | 4.99e-01 | 86.3% | 100.0% |
| 3834037 | 304.9.1.114 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1, RRM_2 | 0.58 | 40.0 | 3.17e-01 | 88.3% | 33.1% |
| 4263302 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.57 | 42.0 | 3.87e-01 | 89.8% | 59.6% |
| 3638657 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.56 | 41.0 | 3.79e-01 | 89.3% | 58.8% |
| 4015784 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.56 | 41.0 | 3.79e-01 | 89.3% | 59.6% |
| 3185512 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.55 | 40.0 | 3.77e-01 | 88.3% | 60.1% |
| 4243894 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.55 | 40.0 | 3.76e-01 | 90.2% | 60.4% |
| 4018691 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.55 | 41.0 | 3.81e-01 | 90.2% | 61.2% |
| 4606373 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.55 | 40.0 | 3.68e-01 | 88.3% | 57.4% |
| 4407903 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.55 | 40.0 | 3.72e-01 | 89.3% | 60.4% |
| 4011130 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.54 | 40.0 | 3.75e-01 | 89.3% | 61.2% |
| 4671158 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.54 | 42.0 | 3.79e-01 | 89.3% | 60.4% |
| 4521182 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.54 | 39.0 | 3.76e-01 | 88.3% | 63.7% |
| 4151784 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.54 | 40.0 | 3.65e-01 | 87.3% | 57.5% |
| 4013188 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.54 | 39.0 | 3.68e-01 | 88.3% | 60.8% |
| 4309132 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.54 | 38.0 | 3.63e-01 | 86.8% | 61.7% |
| 1903147 | 304.45.1.1 ↗ | a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK | 0.54 | 40.0 | 4.50e-01 | 83.9% | 98.8% |
| 4682347 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.53 | 41.0 | 3.75e-01 | 90.2% | 60.4% |
| 3963823 | 304.45.1.1 ↗ | a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK | 0.53 | 39.0 | 4.46e-01 | 81.5% | 100.0% |
| 4610509 | 304.45.1.1 ↗ | a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK | 0.53 | 40.0 | 4.47e-01 | 82.9% | 99.4% |
| 4219489 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.53 | 39.0 | 3.55e-01 | 86.8% | 56.0% |
| 3773999 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.53 | 21.0 | 3.11e-01 | 82.4% | 85.0% |
| 4562438 | 304.45.1.1 ↗ | a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK | 0.53 | 40.0 | 4.45e-01 | 84.9% | 98.2% |
| 1699308 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.53 | 41.0 | 3.66e-01 | 90.2% | 58.0% |
| 3970683 | 304.45.1.0 ↗ | a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK | 0.53 | 39.0 | 4.42e-01 | 84.4% | 99.4% |
| 3245218 | 5067.1.1.3 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Patched | 0.52 | 40.0 | 2.58e-01 | 78.5% | 63.6% |
| 3280334 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.52 | 41.0 | 4.31e-01 | 82.9% | 92.1% |
| 3968511 | 304.45.1.1 ↗ | a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK | 0.51 | 40.0 | 4.32e-01 | 85.9% | 94.9% |
| 3182009 | 304.45.1.1 ↗ | a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK | 0.51 | 41.0 | 4.33e-01 | 84.9% | 93.0% |
| 3791663 | 304.4.1.52 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF7153 | 0.51 | 42.0 | 4.12e-01 | 88.3% | 100.0% |
| 3612417 | 317.1.1.1 ↗ | a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › IF4E | 0.51 | 41.0 | 4.17e-01 | 85.9% | 90.4% |
| 3677529 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.51 | 40.0 | 3.48e-01 | 88.3% | 55.4% |
| 1915668 | 304.45.1.1 ↗ | a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK | 0.51 | 42.0 | 4.32e-01 | 85.4% | 91.7% |
| 3839730 | 304.45.1.1 ↗ | a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK | 0.51 | 38.0 | 4.26e-01 | 99.5% | 100.0% |
| 3301739 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.50 | 38.0 | 3.44e-01 | 87.3% | 57.5% |
| 2798195 | 304.45.1.1 ↗ | a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK | 0.50 | 40.0 | 4.38e-01 | 83.4% | 100.0% |
D2
medium
residues 444-525
Domain cluster:
representative
CATH (71)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3uo2B02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.92 | 64.0 | 6.40e-01 | 73.2% | 70.2% |
| 2r9iA00 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.91 | 62.0 | 6.72e-01 | 73.2% | 81.7% |
| 3l9fA02 | 6.10.140.1570 | Special › Helix non-globular › Helix Hairpins › | 0.90 | 66.0 | 6.64e-01 | 75.6% | 79.0% |
| 2crbA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.89 | 60.0 | 5.58e-01 | 70.7% | 57.7% |
| 4b6xA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.89 | 65.0 | 7.09e-01 | 75.6% | 89.9% |
| 1fpoC02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.89 | 64.0 | 6.17e-01 | 74.4% | 68.1% |
| 8fbnB01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.88 | 66.0 | 4.68e-01 | 78.0% | 32.4% |
| 3b2eF00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.88 | 64.0 | 7.30e-01 | 74.4% | 98.4% |
| 4lwsA00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.88 | 66.0 | 6.12e-01 | 78.0% | 82.0% |
| 4mh6A00 | 1.10.287.1700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.88 | 64.0 | 5.01e-01 | 75.6% | 93.1% |
| 4ijjB00 | 1.20.120.910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain | 0.88 | 69.0 | 5.76e-01 | 81.7% | 56.9% |
| 1nt2B02 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.87 | 66.0 | 7.22e-01 | 78.0% | 95.5% |
| 2wb7A03 | 1.20.120.870 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › pT26-6p, five-helical bundle domain | 0.87 | 64.0 | 5.31e-01 | 76.8% | 46.3% |
| 6r1nA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.87 | 73.0 | 6.69e-01 | 87.8% | 84.5% |
| 4gzrB00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.86 | 62.0 | 6.41e-01 | 74.4% | 85.7% |
| 3agtA00 | 1.20.120.50 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like | 0.86 | 57.0 | 4.76e-01 | 70.7% | 42.1% |
| 4w4kA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.86 | 60.0 | 6.03e-01 | 72.0% | 100.0% |
| 4nb5B02 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.86 | 62.0 | 7.00e-01 | 78.0% | 96.9% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.85 | 70.0 | 7.23e-01 | 86.6% | 90.9% |
| 1wleA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.85 | 65.0 | 5.71e-01 | 79.3% | 64.0% |
| 4aflA00 | 6.10.140.1740 | Special › Helix non-globular › Helix Hairpins › | 0.85 | 72.0 | 6.66e-01 | 90.2% | 72.5% |
| 3anwA01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.84 | 59.0 | 5.27e-01 | 73.2% | 54.0% |
| 3k17A02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.84 | 55.0 | 4.48e-01 | 82.9% | 39.3% |
| 2rd0B00 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.83 | 66.0 | 5.41e-01 | 82.9% | 75.5% |
| 1zpyA00 | 6.10.140.1960 | Special › Helix non-globular › Helix Hairpins › | 0.83 | 62.0 | 5.99e-01 | 79.3% | 70.3% |
| 3nymA00 | 6.10.290.10 | Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.82 | 64.0 | 5.46e-01 | 81.7% | 78.2% |
| 6tkvA01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.81 | 61.0 | 6.64e-01 | 79.3% | 100.0% |
| 4i0xG00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.81 | 60.0 | 6.51e-01 | 76.8% | 100.0% |
| 1rv2D04 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.81 | 59.0 | 6.35e-01 | 76.8% | 90.0% |
| 3tulB00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.80 | 64.0 | 5.40e-01 | 85.4% | 72.9% |
| 6ygiB01 | 1.10.4090.10 | Mainly Alpha › Orthogonal Bundle › Hepatitis B viral capsid (hbcag) fold › Viral capsid, core domain supefamily, Hepatitis B virus | 0.80 | 61.0 | 4.98e-01 | 80.5% | 55.5% |
| 4ciuA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.80 | 65.0 | 4.81e-01 | 85.4% | 53.6% |
| 3lssA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.80 | 67.0 | 5.97e-01 | 89.0% | 88.4% |
| 1ydxA02 | 1.10.287.1120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein | 0.80 | 66.0 | 6.39e-01 | 86.6% | 92.2% |
| 1sg2A00 | 3.30.910.20 | Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain | 0.80 | 72.0 | 5.92e-01 | 97.6% | 57.4% |
| 6h9xA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.80 | 67.0 | 6.21e-01 | 95.1% | 72.5% |
| 1fewA00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.79 | 68.0 | 5.23e-01 | 92.7% | 45.1% |
| 4q20A01 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.79 | 64.0 | 6.41e-01 | 91.5% | 85.4% |
| 3r84B00 | 6.10.280.160 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 | 0.78 | 61.0 | 6.24e-01 | 81.7% | 83.7% |
| 4e4eA01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.78 | 58.0 | 6.16e-01 | 78.0% | 100.0% |
| 3favD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.78 | 54.0 | 5.58e-01 | 73.2% | 100.0% |
| 2e9xA01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.77 | 56.0 | 4.84e-01 | 76.8% | 50.0% |
| 2i0mA01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.77 | 57.0 | 5.22e-01 | 78.0% | 60.4% |
| 3cazB00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.77 | 67.0 | 4.88e-01 | 93.9% | 67.1% |
| 1s35A01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.77 | 54.0 | 5.05e-01 | 82.9% | 59.4% |
| 2bdeA03 | 1.20.58.1160 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.77 | 63.0 | 6.47e-01 | 90.2% | 97.4% |
| 1gqeA01 | 1.20.58.410 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Release factor | 0.76 | 54.0 | 4.87e-01 | 74.4% | 80.5% |
| 1luwA01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.76 | 57.0 | 6.31e-01 | 78.0% | 100.0% |
| 3txsC01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.75 | 57.0 | 5.98e-01 | 81.7% | 89.3% |
| 3r84A00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.74 | 55.0 | 5.57e-01 | 79.3% | 81.5% |
| 1a36A04 | 1.10.132.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.74 | 56.0 | 4.38e-01 | 81.7% | 38.3% |
| 7wivA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.73 | 63.0 | 4.31e-01 | 97.6% | 27.4% |
| 3l0iA01 | 1.20.120.1520 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.73 | 55.0 | 4.30e-01 | 80.5% | 51.1% |
| 4h63H01 | 1.20.58.1710 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.72 | 56.0 | 5.89e-01 | 82.9% | 97.2% |
| 2ic6A00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.72 | 53.0 | 5.62e-01 | 79.3% | 93.0% |
| 1ku9A02 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.72 | 53.0 | 5.83e-01 | 78.0% | 100.0% |
| 3l1nA02 | 1.20.1280.140 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.71 | 47.0 | 4.68e-01 | 73.2% | 64.4% |
| 1i6zA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.71 | 61.0 | 5.17e-01 | 97.6% | 57.8% |
| 2x2vA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.71 | 52.0 | 5.56e-01 | 78.0% | 100.0% |
| 3na7A00 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.70 | 58.0 | 4.21e-01 | 92.7% | 34.6% |
| 1wa8A00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.70 | 53.0 | 4.99e-01 | 81.7% | 74.7% |
| 4dylA02 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.70 | 55.0 | 5.30e-01 | 86.6% | 86.2% |
| 4v1gA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.69 | 58.0 | 5.74e-01 | 91.5% | 92.9% |
| 1m5iA00 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.69 | 59.0 | 5.38e-01 | 91.5% | 75.2% |
| 2ke4A00 | 6.10.140.470 | Special › Helix non-globular › Helix Hairpins › | 0.69 | 53.0 | 5.03e-01 | 82.9% | 71.4% |
| 3hwcA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.68 | 50.0 | 3.77e-01 | 79.3% | 31.0% |
| 6ynwH01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.67 | 54.0 | 5.65e-01 | 86.6% | 100.0% |
| 3i2wA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.67 | 56.0 | 3.99e-01 | 93.9% | 65.5% |
| 4wpeA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.65 | 57.0 | 4.01e-01 | 100.0% | 73.8% |
| 2kg7B00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.59 | 45.0 | 4.29e-01 | 82.9% | 72.2% |
| 4ys0A02 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.56 | 46.0 | 3.59e-01 | 90.2% | 42.4% |
ECOD (73)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3548194 | 192.2.1.18 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ING | 0.90 | 71.0 | 6.30e-01 | 81.7% | 87.3% |
| 3786359 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.90 | 67.0 | 6.23e-01 | 78.0% | 98.0% |
| 3553813 | 3291.1.1.82 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › ING | 0.89 | 71.0 | 6.00e-01 | 82.9% | 56.0% |
| 4542972 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.89 | 68.0 | 4.88e-01 | 79.3% | 36.1% |
| 3772767 | 5086.1.1.87 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › ING | 0.89 | 71.0 | 5.99e-01 | 82.9% | 56.0% |
| 3595002 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.88 | 69.0 | 6.42e-01 | 81.7% | 67.0% |
| 4663913 | 5094.1.1.1 ↗ | a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › OmpH | 0.88 | 82.0 | 6.53e-01 | 98.8% | 55.7% |
| 3903422 | 3291.1.1.1 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 | 0.88 | 67.0 | 5.78e-01 | 79.3% | 55.8% |
| 5028533 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.88 | 63.0 | 5.29e-01 | 74.4% | 98.5% |
| 5054861 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.88 | 70.0 | 4.22e-01 | 82.9% | 19.6% |
| 4477580 | 5086.1.1.118 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › BBS2_hp | 0.88 | 70.0 | 6.94e-01 | 82.9% | 82.4% |
| 4017817 | 3922.1.1.229 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Cep57_MT_bd | 0.87 | 69.0 | 5.58e-01 | 81.7% | 47.9% |
| 3589720 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.87 | 62.0 | 4.97e-01 | 81.7% | 41.4% |
| 5024408 | 3755.3.1.637 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 | 0.87 | 72.0 | 5.35e-01 | 86.6% | 54.6% |
| 3535225 | 3939.1.1.369 ↗ | alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › PF28341 | 0.87 | 69.0 | 4.98e-01 | 82.9% | 34.1% |
| 3738041 | 192.5.1.1 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1 | 0.87 | 68.0 | 6.78e-01 | 81.7% | 78.8% |
| 3628737 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.87 | 77.0 | 5.40e-01 | 95.1% | 46.0% |
| 3626769 | 192.5.1.14 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1_TOCA | 0.87 | 69.0 | 6.67e-01 | 82.9% | 77.8% |
| 3915908 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.86 | 67.0 | 5.95e-01 | 81.7% | 60.0% |
| 4974450 | 3291.1.1.4 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › PspA_IM30 | 0.86 | 69.0 | 5.19e-01 | 82.9% | 40.0% |
| 3296414 | 192.29.1.168 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF641 | 0.86 | 70.0 | 7.54e-01 | 85.4% | 100.0% |
| 3892960 | 3291.1.1.86 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › PL48 | 0.86 | 71.0 | 5.78e-01 | 86.6% | 50.7% |
| 4007316 | 3291.1.1.4 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › PspA_IM30 | 0.85 | 71.0 | 5.55e-01 | 86.6% | 47.7% |
| 3968763 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.85 | 69.0 | 7.05e-01 | 85.4% | 87.5% |
| 4018440 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.85 | 71.0 | 6.67e-01 | 86.6% | 86.3% |
| 3573035 | 109.4.1.3370 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PL48 | 0.85 | 71.0 | 5.82e-01 | 86.6% | 52.6% |
| 3877003 | 632.22.1.95 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › PF28341 | 0.85 | 67.0 | 4.98e-01 | 82.9% | 36.8% |
| 4882756 | 3291.1.1.1 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 | 0.85 | 71.0 | 5.70e-01 | 87.8% | 50.3% |
| 4977923 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.85 | 68.0 | 5.25e-01 | 82.9% | 76.2% |
| 5049840 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.85 | 66.0 | 6.97e-01 | 81.7% | 89.3% |
| 3412574 | 3291.1.1.82 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › ING | 0.85 | 71.0 | 5.96e-01 | 87.8% | 56.9% |
| 4303085 | 3755.3.1.467 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DRC7_C | 0.84 | 67.0 | 5.78e-01 | 82.9% | 58.3% |
| 3840552 | 5086.1.1.90 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › V_ATPase_I | 0.84 | 70.0 | 5.43e-01 | 87.8% | 65.5% |
| 4944766 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.84 | 67.0 | 4.82e-01 | 82.9% | 34.1% |
| 3752758 | 3755.3.1.467 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DRC7_C | 0.84 | 66.0 | 5.32e-01 | 82.9% | 47.0% |
| 3336677 | 605.1.1.132 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › DUF641 | 0.84 | 67.0 | 7.03e-01 | 85.4% | 92.0% |
| 3608116 | 5086.1.1.177 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › KIF9 | 0.83 | 70.0 | 5.63e-01 | 87.8% | 87.6% |
| 3849660 | 11.2.1.25 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PL48 | 0.83 | 70.0 | 5.90e-01 | 89.0% | 86.9% |
| 3232850 | 3684.1.1.48 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › BBS2_hp | 0.83 | 69.0 | 6.49e-01 | 86.6% | 74.7% |
| 3974263 | 5094.1.1.1 ↗ | a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › OmpH | 0.83 | 76.0 | 6.20e-01 | 97.6% | 57.9% |
| 4117257 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.83 | 66.0 | 4.32e-01 | 82.9% | 23.7% |
| 4961508 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.83 | 67.0 | 7.01e-01 | 91.5% | 93.3% |
| 4608200 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.83 | 63.0 | 5.42e-01 | 80.5% | 52.8% |
| 3239667 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.83 | 65.0 | 3.74e-01 | 82.9% | 9.9% |
| 3745112 | 3755.3.1.298 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › ING | 0.82 | 68.0 | 5.86e-01 | 86.6% | 59.2% |
| 3984060 | 1075.4.1.7 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › SbmA_BacA | 0.82 | 69.0 | 4.34e-01 | 90.2% | 40.0% |
| 3225949 | 4323.1.1.1 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I | 0.82 | 69.0 | 5.49e-01 | 87.8% | 75.3% |
| 3484074 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.82 | 65.0 | 5.33e-01 | 82.9% | 80.7% |
| 3283457 | 150.5.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 | 0.82 | 64.0 | 5.94e-01 | 81.7% | 85.0% |
| 3646439 | 192.8.1.263 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › DUF7615 | 0.82 | 65.0 | 6.42e-01 | 82.9% | 80.0% |
| 4411992 | 3710.1.1.1 ↗ | alpha bundles › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › CHD5 | 0.82 | 64.0 | 5.80e-01 | 81.7% | 68.6% |
| 3271459 | 4323.1.1.1 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I | 0.80 | 67.0 | 5.36e-01 | 87.8% | 72.7% |
| 3895215 | 4177.1.1.5 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Vps5 | 0.80 | 67.0 | 4.84e-01 | 89.0% | 75.3% |
| 4936792 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.80 | 71.0 | 5.37e-01 | 95.1% | 43.8% |
| 3393794 | 3922.1.1.211 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › DRC7_C | 0.80 | 68.0 | 5.72e-01 | 91.5% | 65.9% |
| 4943532 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.80 | 62.0 | 6.61e-01 | 81.7% | 100.0% |
| 4602052 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.80 | 66.0 | 5.73e-01 | 87.8% | 82.5% |
| 3268739 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.80 | 63.0 | 5.86e-01 | 82.9% | 76.0% |
| 3167298 | 3711.1.1.0 ↗ | alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein | 0.79 | 70.0 | 6.44e-01 | 96.3% | 81.0% |
| 3210972 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.79 | 62.0 | 4.20e-01 | 82.9% | 25.8% |
| 4016635 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.78 | 70.0 | 6.45e-01 | 93.9% | 83.0% |
| 3492279 | 4006.1.1.0 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain | 0.78 | 63.0 | 5.60e-01 | 86.6% | 65.2% |
| 3766955 | 192.7.1.17 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FAM186A-B_C | 0.77 | 71.0 | 5.80e-01 | 100.0% | 76.6% |
| 3812957 | 606.1.1.13 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › DUF3475 | 0.76 | 68.0 | 4.80e-01 | 96.3% | 46.0% |
| 3824276 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.76 | 68.0 | 5.22e-01 | 97.6% | 45.6% |
| 3852832 | 3922.1.1.72 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › FAM186A-B_C | 0.76 | 69.0 | 5.58e-01 | 100.0% | 74.7% |
| 4345017 | 2004.1.1.433 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 | 0.76 | 65.0 | 3.86e-01 | 95.1% | 13.1% |
| 3239791 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.74 | 59.0 | 4.57e-01 | 86.6% | 41.1% |
| 4162727 | 5086.1.1.12 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Uds1 | 0.73 | 68.0 | 5.52e-01 | 100.0% | 60.0% |
| 5067713 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.73 | 61.0 | 5.54e-01 | 91.5% | 74.5% |
| 3598025 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.72 | 60.0 | 4.76e-01 | 91.5% | 77.6% |
| 3594486 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.71 | 56.0 | 4.99e-01 | 86.6% | 59.2% |
| 3598261 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.66 | 48.0 | 3.95e-01 | 78.0% | 43.2% |
D3
medium
residues 526-607
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ykhA00 | 6.10.140.200 | Special › Helix non-globular › Helix Hairpins › | 0.58 | 40.0 | 3.88e-01 | 73.2% | 89.5% |
| 3um7B01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.53 | 40.0 | 3.86e-01 | 82.9% | 82.5% |
| 2lf0A01 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.51 | 33.0 | 3.74e-01 | 89.0% | 90.0% |
| 7lb8B01 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.51 | 43.0 | 2.94e-01 | 96.3% | 66.9% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4047129 | 197.1.1.4 ↗ | alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › FERM_F2 | 0.61 | 43.0 | 3.46e-01 | 75.6% | 61.2% |
| 3249901 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 44.0 | 2.90e-01 | 80.5% | 36.8% |
| 3514804 | 3722.1.1.0 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain | 0.59 | 41.0 | 2.94e-01 | 72.0% | 25.4% |
| 3253413 | 4168.1.1.0 ↗ | alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain | 0.57 | 41.0 | 3.94e-01 | 75.6% | 70.5% |
| 3063033 | 109.4.1.16 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PUF | 0.53 | 40.0 | 2.65e-01 | 82.9% | 38.5% |