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MZ231001.1__QYS24890.1__fNO16879116_0008__00008

Bact-Vir

MZ231001.1__QYS24890.1__fNO16879116_0008__00008

Identity

Accession:
MZ231001 ↗
Kingdom:
phage

Quality

80.9 mean pLDDT

Taxonomy

Abadenavirae› Produgelaviricota› Belvinaviricetes› Vinavirales› Corticoviridae› Vibrio_phage_NO16-like_87-9-116

TaxID: 2863255

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-36
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1jr7A00 3.60.130.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like 0.60 47.0 2.86e-01 97.2% 68.3%
4h09D00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.57 43.0 2.47e-01 86.1% 14.6%
3iayA06 6.10.140.1540 Special › Helix non-globular › Helix Hairpins › 0.57 44.0 4.41e-01 91.7% 89.5%
4rshA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.56 44.0 2.93e-01 94.4% 90.9%
4oseB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 44.0 2.64e-01 91.7% 17.6%
1lwjA02 3.90.400.10 Alpha Beta › Alpha-Beta Complex › Oligo-1,6-glucosidase; domain 2 › Oligo-1,6-glucosidase; Domain 2 0.55 42.0 3.73e-01 100.0% 64.6%
4lnuB01 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.54 39.0 2.44e-01 88.9% 35.5%
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 40.0 3.40e-01 97.2% 64.4%
1on2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 3.50e-01 97.2% 65.3%
3l11A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.52 36.0 2.77e-01 77.8% 76.0%
1p2fA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 39.0 3.08e-01 94.4% 52.6%
2isyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 2.80e-01 97.2% 34.1%
3n75A04 3.90.100.10 Alpha Beta › Alpha-Beta Complex › Ornithine Decarboxylase; Chain A, domain 4 › Orn/Lys/Arg decarboxylase, C-terminal domain 0.51 37.0 2.78e-01 88.9% 61.5%
5dcmB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 35.0 2.76e-01 77.8% 69.4%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3728249 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.66 54.0 3.71e-01 100.0% 57.9%
3415698 389.2.1.0 ↗ few secondary structure elements › EGF-like › Serine protease inhibitors › Serine protease inhibitors 0.62 44.0 4.09e-01 77.8% 98.0%
3750817 4052.1.1.1 ↗ beta complex topology › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA_dh_M 0.61 47.0 3.19e-01 91.7% 72.0%
4502538 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.60 41.0 3.99e-01 77.8% 80.0%
4341999 139.3.1.1 ↗ few secondary structure elements › Multiheme cytochromes › Photosynthetic reaction centre (cytochrome subunit) › Photosynthetic reaction centre (cytochrome subunit) › CytoC_RC 0.57 48.0 2.80e-01 100.0% 63.3%
3998098 384.1.1.0 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like 0.57 43.0 3.86e-01 91.7% 74.1%
3722527 101.1.2.359 ↗ alpha arrays › HTH › HTH › winged helix domain › GPIID_WHD 0.56 46.0 2.81e-01 94.4% 21.2%
3605421 1189.1.1.6 ↗ alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › ISG65-75 0.56 44.0 2.66e-01 100.0% 16.4%
3724274 101.1.2.359 ↗ alpha arrays › HTH › HTH › winged helix domain › GPIID_WHD 0.56 43.0 2.77e-01 94.4% 25.0%
3625486 384.1.1.1 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI 0.55 41.0 3.19e-01 86.1% 38.9%
3262645 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 39.0 3.11e-01 91.7% 57.9%
3622828 5.1.4.319 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_1st 0.53 37.0 2.17e-01 75.0% 88.4%
3262247 387.1.1.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.52 38.0 2.24e-01 83.3% 26.7%
4340348 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 41.0 2.84e-01 94.4% 32.9%
3480546 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.51 39.0 2.41e-01 91.7% 16.2%
3359773 4291.1.1.1 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.50 39.0 2.33e-01 100.0% 75.0%