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MZ234018.1__QZI79287.1__101117BS1_011__00011

Bact-Vir

MZ234018.1__QZI79287.1__101117BS1_011__00011

Identity

Accession:
MZ234018 ↗
Kingdom:
phage

Quality

88.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Tequatrovirus› Escherichia_phage_vB_EcoM-101117BS1

TaxID: 2865795

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-33
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3jyoA01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.92 77.0 4.94e-01 93.9% 22.3%
3dsbA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.90 75.0 5.20e-01 93.9% 30.7%
3nbiA01 1.10.8.1020 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain 0.87 70.0 5.83e-01 90.9% 51.7%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.85 67.0 5.07e-01 90.9% 37.0%
2fsjA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.82 65.0 4.22e-01 90.9% 21.0%
6hqvA05 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.79 55.0 3.48e-01 75.8% 14.1%
2gptA03 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.79 60.0 3.93e-01 93.9% 19.5%
1q5qH00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.77 63.0 3.85e-01 100.0% 33.0%
3gz5B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 58.0 4.57e-01 90.9% 39.2%
3dv9A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.76 58.0 4.66e-01 90.9% 41.4%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.76 53.0 3.55e-01 84.8% 18.3%
1npyA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.75 56.0 3.65e-01 90.9% 17.8%
1rypA00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.73 61.0 3.65e-01 100.0% 29.2%
1rypC00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.73 61.0 3.68e-01 100.0% 29.1%
8thmA01 1.20.120.1310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Carboxysome Shell Carbonic Anhydrase, N-terminal helical domain 0.73 57.0 4.49e-01 97.0% 41.2%
5fmgG00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.72 61.0 3.73e-01 100.0% 32.9%
7lxuE01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.71 58.0 3.59e-01 100.0% 32.7%
1gu2A00 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.68 54.0 3.71e-01 93.9% 91.9%
1ds8M02 1.20.85.10 Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like 0.67 52.0 3.34e-01 100.0% 18.4%
6g9sA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.65 48.0 2.80e-01 90.9% 15.1%
2zb9A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 51.0 4.54e-01 93.9% 64.0%
1odfA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 46.0 2.78e-01 87.9% 97.1%
1f45B00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.57 46.0 3.04e-01 90.9% 23.3%
1bccB02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.56 43.0 2.74e-01 87.9% 50.8%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3928401 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.95 82.0 6.57e-01 93.9% 51.7%
4238553 2003.1.1.25 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Shikimate_DH,SDH_C 0.94 77.0 4.77e-01 90.9% 18.2%
4645608 5046.1.1.1 ↗ extended segments › F-type ATP synthase subunit b › F-type ATP synthase subunit b › F-type ATP synthase subunit b › ATP-synt_B 0.94 77.0 4.79e-01 90.9% 19.0%
4384260 2003.1.1.76 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › SDH_C 0.93 82.0 4.93e-01 100.0% 16.5%
3964061 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.92 77.0 5.31e-01 93.9% 29.8%
3195293 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.92 69.0 4.15e-01 81.8% 13.8%
3607058 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.91 76.0 4.75e-01 93.9% 18.8%
4990553 2003.1.1.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Shikimate_DH 0.90 75.0 4.72e-01 93.9% 19.4%
4507743 2003.1.1.76 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › SDH_C 0.90 75.0 4.57e-01 93.9% 16.9%
4332024 2003.1.1.25 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Shikimate_DH,SDH_C 0.89 72.0 4.43e-01 93.9% 16.8%
4595340 2003.1.1.76 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › SDH_C 0.89 73.0 4.52e-01 93.9% 17.2%
4161178 2003.1.1.76 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › SDH_C 0.88 73.0 4.47e-01 93.9% 16.3%
4300469 2003.1.1.25 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Shikimate_DH,SDH_C 0.87 71.0 4.43e-01 93.9% 17.7%
4045240 2003.1.1.25 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Shikimate_DH,SDH_C 0.86 72.0 4.43e-01 93.9% 17.4%
2739801 2003.1.1.25 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Shikimate_DH,SDH_C 0.86 70.0 4.36e-01 97.0% 17.0%
2771090 2003.1.1.25 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Shikimate_DH,SDH_C 0.85 70.0 4.35e-01 93.9% 17.6%
4669613 2003.1.1.25 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Shikimate_DH,SDH_C 0.85 66.0 4.21e-01 93.9% 18.2%
3243611 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.84 66.0 5.84e-01 90.9% 60.0%
3327722 5050.1.1.26 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › UVB_sens_prot 0.82 61.0 3.52e-01 84.8% 9.2%
5053903 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.82 63.0 4.33e-01 90.9% 25.0%
3955434 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.82 64.0 5.68e-01 93.9% 60.0%
3786236 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.81 54.0 3.49e-01 81.8% 16.3%
3619546 3712.1.1.0 ↗ a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 0.79 60.0 4.93e-01 87.9% 44.6%
4190239 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.79 58.0 4.34e-01 97.0% 31.1%
4587402 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.79 58.0 4.32e-01 84.8% 32.2%
4306911 2003.1.1.25 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Shikimate_DH,SDH_C 0.78 61.0 3.92e-01 93.9% 18.2%
3980764 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.77 61.0 5.57e-01 93.9% 64.4%
3683076 5050.1.1.26 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › UVB_sens_prot 0.77 60.0 3.73e-01 90.9% 15.8%
4958195 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 66.0 5.60e-01 97.0% 58.2%
4031678 101.1.2.20 ↗ alpha arrays › HTH › HTH › winged helix domain › Arg_repressor 0.76 59.0 4.88e-01 93.9% 46.2%
4190132 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 58.0 5.15e-01 93.9% 58.0%
3174143 109.3.1.164 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_4 0.75 52.0 3.09e-01 81.8% 9.4%
5013811 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 60.0 5.22e-01 97.0% 58.2%
4534489 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.74 57.0 3.67e-01 97.0% 17.6%
4978898 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 59.0 5.37e-01 90.9% 66.7%
3434742 3443.1.1.0 ↗ alpha duplicates or obligate multimers › Get5 carboxyl domain › Get5 carboxyl domain › Get5 carboxyl domain 0.73 57.0 5.83e-01 97.0% 100.0%
3501945 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 55.0 4.63e-01 93.9% 47.7%
3956349 191.1.1.15 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_11 0.72 58.0 3.99e-01 93.9% 28.3%
4994794 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 54.0 4.33e-01 90.9% 40.0%
5021354 101.1.2.619 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_33 0.72 55.0 4.48e-01 87.9% 43.1%
5017698 101.1.1.187 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_33 0.72 57.0 4.66e-01 90.9% 44.6%
3405944 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.71 57.0 4.43e-01 90.9% 44.0%
5008720 101.1.1.548 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_32 0.71 55.0 4.47e-01 87.9% 44.6%
5003693 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 55.0 4.47e-01 87.9% 44.6%
3804317 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.70 52.0 3.78e-01 93.9% 29.2%
4966213 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 52.0 4.32e-01 84.8% 52.3%
5007660 101.1.1.187 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_33 0.69 54.0 4.45e-01 87.9% 44.6%
3973994 192.4.1.0 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.69 49.0 3.80e-01 75.8% 36.0%
4961900 101.1.1.187 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_33 0.68 52.0 4.16e-01 90.9% 38.7%
4112877 2498.1.1.122 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › PF29448 0.67 52.0 3.25e-01 93.9% 26.0%
3709551 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 55.0 4.63e-01 100.0% 55.0%
3744764 2004.1.1.140 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Zeta_toxin 0.64 54.0 3.23e-01 100.0% 57.4%
4014657 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.64 52.0 4.53e-01 97.0% 58.2%
4016778 2004.1.1.43 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SRP54 0.63 52.0 3.11e-01 100.0% 76.6%
3706618 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.63 53.0 4.19e-01 100.0% 44.0%
3740038 101.1.1.256 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.62 46.0 4.18e-01 93.9% 58.0%
3168153 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.62 51.0 3.04e-01 93.9% 10.7%
4801617 2004.1.1.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.61 47.0 3.07e-01 84.8% 38.2%
4070374 2004.1.1.63 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › FtsK_SpoIIIE 0.53 44.0 2.56e-01 97.0% 63.6%