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MZ234050.1__QZI84624.1__UTI89UKE3_023__00023

Bact-Vir

MZ234050.1__QZI84624.1__UTI89UKE3_023__00023

Identity

Accession:
MZ234050 ↗
Kingdom:
phage

Quality

84.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autosignataviridae› Vectrevirus› Escherichia_phage_vB_EcoP-UTI89UKE3

TaxID: 2865827

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 53-125
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.67 44.0 4.93e-01 83.6% 98.0%
4z4qA04 1.10.268.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 0.63 43.0 4.07e-01 87.7% 58.4%
1ni5A02 1.20.59.20 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › 0.60 43.0 4.09e-01 82.2% 64.0%
2zg6A02 1.10.150.660 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.58 40.0 4.08e-01 71.2% 73.6%
1f4qA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.57 46.0 3.64e-01 90.4% 99.4%
2jn6A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.57 42.0 4.03e-01 86.3% 68.2%
8f4cA01 1.20.85.10 Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like 0.56 45.0 3.72e-01 87.7% 54.6%
1yg2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 42.0 4.10e-01 80.8% 82.3%
2i7aA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.55 43.0 3.37e-01 83.6% 99.4%
1eg3A04 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.55 41.0 4.06e-01 84.9% 93.9%
1mw5A01 1.20.272.30 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.54 39.0 3.21e-01 78.1% 69.0%
6jlzA01 1.20.120.1070 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain 0.53 41.0 3.67e-01 84.9% 78.7%
2fpqA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.52 38.0 2.44e-01 79.5% 45.2%
4bwxA03 1.10.287.3700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 37.0 3.65e-01 76.7% 97.5%
3k9dA02 3.40.309.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 0.50 44.0 3.32e-01 100.0% 61.6%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3184003 101.1.1.216 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_8 0.79 56.0 6.32e-01 76.7% 98.2%
3640032 101.1.3.9 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Myb_DNA-bind_8 0.78 53.0 6.00e-01 82.2% 92.7%
4011551 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.77 51.0 5.72e-01 72.6% 89.1%
4961017 101.1.1.552 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF5806 0.75 55.0 5.49e-01 78.1% 82.7%
4967694 101.1.1.552 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF5806 0.73 53.0 5.27e-01 76.7% 100.0%
3295502 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.71 49.0 5.15e-01 80.8% 81.5%
3313196 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.71 55.0 4.60e-01 83.6% 65.6%
3194261 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 53.0 4.50e-01 79.5% 50.4%
4927051 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 47.0 4.84e-01 72.6% 81.4%
5021067 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 48.0 4.26e-01 80.8% 66.7%
4940719 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 46.0 3.66e-01 78.1% 55.6%
5028531 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 43.0 4.10e-01 80.8% 58.9%
4210079 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 42.0 4.01e-01 79.5% 60.0%
4501841 101.1.2.280 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_12 0.61 45.0 4.45e-01 79.5% 83.7%
3602364 101.1.15.0 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.61 46.0 4.29e-01 80.8% 88.9%
5010731 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 44.0 3.42e-01 78.1% 45.0%
3901393 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.59 41.0 4.05e-01 74.0% 78.8%
4933603 101.8.1.0 ↗ alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases 0.57 40.0 3.31e-01 83.6% 37.9%
3908381 101.1.2.507 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_TANC1 0.57 41.0 3.84e-01 78.1% 73.7%
4927329 6049.1.1.0 ↗ alpha bundles › PH0832-like › PH0832-like › PH0832-like 0.56 41.0 3.89e-01 100.0% 64.4%
3809622 568.1.1.4 ↗ few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related › CHCH 0.55 44.0 4.28e-01 95.9% 78.3%
3308430 108.1.1.20 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_like 0.55 42.0 3.81e-01 82.2% 74.0%
3777582 2004.1.1.73 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.54 36.0 2.32e-01 72.6% 13.5%
3479146 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.54 41.0 3.21e-01 86.3% 40.0%
3833511 108.1.1.30 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_8 0.54 41.0 3.60e-01 84.9% 75.7%
5038669 101.1.2.927 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.53 39.0 3.45e-01 80.8% 60.9%
3720602 101.1.2.359 ↗ alpha arrays › HTH › HTH › winged helix domain › GPIID_WHD 0.53 39.0 3.83e-01 80.8% 85.0%
3764267 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.52 42.0 4.00e-01 93.2% 85.6%
3501721 101.1.10.4 ↗ alpha arrays › HTH › HTH › Cyclin-like › RB_B 0.52 37.0 2.94e-01 78.1% 33.9%
3564333 108.1.1.42 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › CAPN13-like_C_EFh 0.52 44.0 3.38e-01 100.0% 93.1%
3707135 108.1.1.29 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.52 38.0 3.41e-01 82.2% 60.9%
3896785 108.1.1.48 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_9 0.51 41.0 4.15e-01 90.4% 96.0%
3429686 108.1.1.1 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1 0.51 40.0 3.13e-01 89.0% 47.6%
3609317 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.51 39.0 3.88e-01 86.3% 88.7%
3445365 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.50 38.0 3.68e-01 84.9% 89.4%
D2 high residues 149-376
PDB
Domain cluster: rep: MK893987.1__QDF14417.1__X__00120__D134-390
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00149.34 best Metallophos 22.7 1.70e-04 77.6% 82.5%
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1su1A00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.82 60.0 6.70e-01 97.4% 92.9%
7s0tF01 3.60.21.50 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › 0.70 65.0 5.75e-01 96.5% 82.4%
3av0A01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.67 64.0 6.22e-01 99.6% 98.4%
3qfmA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.66 62.0 5.91e-01 99.6% 86.8%
2yvtA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.65 60.0 5.77e-01 96.9% 99.2%
4ltyA01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.65 62.0 5.70e-01 99.6% 97.9%
1t71A00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.64 60.0 5.55e-01 99.1% 94.7%
1jx7A00 3.40.1260.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › DsrEFH-like 0.61 33.0 4.37e-01 96.5% 100.0%
6gvdA02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.58 44.0 3.93e-01 78.1% 80.3%
3wnkA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.58 51.0 4.42e-01 94.3% 98.8%
8d89A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.57 50.0 4.24e-01 94.3% 97.9%
1jndA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.54 47.0 4.28e-01 94.3% 100.0%
3pztB00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.53 50.0 4.54e-01 100.0% 86.5%
2c0hA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.53 46.0 4.01e-01 93.9% 90.9%
4gicA01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.52 29.0 3.53e-01 87.7% 81.9%
2ftpA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 47.0 4.34e-01 100.0% 96.0%
3hdvB00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 28.0 3.68e-01 93.4% 96.0%
1xjkA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.51 39.0 2.85e-01 78.5% 55.1%
2nyvA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.50 33.0 3.94e-01 93.9% 99.3%
1r1rA02 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.50 45.0 3.48e-01 96.9% 55.2%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5080277 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.80 73.0 7.17e-01 95.6% 95.5%
5053888 246.2.1.7 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › DNA_pol_E_B 0.76 70.0 6.41e-01 96.5% 87.2%
4944055 246.2.1.0 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases 0.66 54.0 5.37e-01 88.2% 81.3%
5023985 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.66 63.0 5.75e-01 100.0% 87.2%
5077075 246.2.1.9 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 0.66 59.0 5.85e-01 95.6% 90.2%
5083835 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.66 61.0 5.27e-01 98.2% 93.5%
3967424 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.65 62.0 5.91e-01 98.2% 94.9%
4932745 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.65 59.0 5.62e-01 96.5% 99.2%
3588670 246.2.1.10 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › YmdB 0.65 60.0 5.72e-01 97.8% 99.6%
3602396 246.2.1.9 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 0.64 61.0 5.97e-01 99.1% 97.1%
4944784 246.2.1.0 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases 0.64 61.0 5.84e-01 100.0% 95.7%
7873 246.2.1.10 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › YmdB 0.64 60.0 5.55e-01 99.1% 94.7%
4944785 246.2.1.0 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases 0.64 59.0 5.66e-01 97.8% 88.8%
5074670 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.64 59.0 5.84e-01 97.8% 95.8%
5074235 7545.1.1.1 ↗ a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DsrE 0.63 34.0 4.56e-01 80.7% 100.0%
3186913 246.2.1.0 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases 0.62 55.0 5.04e-01 93.9% 95.9%
4992762 7545.1.1.1 ↗ a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DsrE 0.62 32.0 4.38e-01 96.5% 98.3%
4243545 7545.1.1.1 ↗ a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DsrE 0.62 32.0 4.34e-01 95.6% 97.4%
5017198 7545.1.1.1 ↗ a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DsrE 0.61 32.0 4.39e-01 96.5% 100.0%
4990330 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.61 56.0 5.43e-01 96.9% 93.3%
4976017 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.60 55.0 5.33e-01 97.8% 86.7%
3997812 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.60 55.0 5.08e-01 97.4% 95.5%
5075505 246.2.1.9 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 0.59 54.0 5.31e-01 95.6% 99.6%
5019172 7545.1.1.1 ↗ a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DsrE 0.59 33.0 4.37e-01 96.5% 99.2%
5000407 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.57 52.0 5.05e-01 97.8% 93.6%
5033556 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.56 34.0 4.30e-01 99.1% 99.3%
5009930 7592.1.1.6 ↗ a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › Csa3_N 0.56 33.0 4.14e-01 100.0% 95.6%