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MZ322021.1__QXN74349.1__SEA_CAFASSO_134__00134

Bact-Vir

MZ322021.1__QXN74349.1__SEA_CAFASSO_134__00134

Identity

Accession:
MZ322021 ↗
Kingdom:
phage

Quality

56.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kruegerviridae› Cafassovirus› Gordonia_phage_Cafasso

TaxID: 2851095

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 131-205
PDB
D2 high residues 233-316
PDB
D3 high residues 354-412
PDB
D4 medium residues 467-611
PDB
D5 medium residues 641-685_753-873
PDB
Domain cluster: rep: KR063281.1__AKJ72552.1__GMA2_14__00014__D100-243
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03496.21 best ADPrib_exo_Tox 37.4 2.30e-09 78.3% 42.6%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fk7A00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.87 73.0 6.71e-01 86.1% 100.0%
4xsgB00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.85 71.0 6.52e-01 86.1% 100.0%
4h03A02 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.84 69.0 6.38e-01 84.9% 100.0%
1qs1A02 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.83 69.0 6.45e-01 86.1% 100.0%
1ojqA00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.81 71.0 6.42e-01 90.4% 99.5%
2j3vA02 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.80 66.0 6.01e-01 84.9% 98.1%
1gzeA00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.79 71.0 6.54e-01 93.4% 99.0%
5wtzA01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.78 67.0 6.12e-01 89.8% 96.7%
2wn5A01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.76 60.0 5.68e-01 81.3% 99.0%
1yqyA01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.76 62.0 5.75e-01 84.3% 100.0%
2j3xA01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.76 65.0 5.90e-01 90.4% 98.2%
2gwlA00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.74 54.0 5.06e-01 75.3% 66.0%
3u0jA00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.70 52.0 4.58e-01 75.9% 80.2%
6k93A00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.65 47.0 4.15e-01 74.7% 66.1%
4xzjA01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.61 57.0 5.22e-01 98.8% 94.8%
1dfuP00 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.52 27.0 3.51e-01 100.0% 88.3%
6dddH00 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.51 26.0 3.39e-01 100.0% 87.1%
1feuA01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.50 26.0 3.39e-01 83.1% 89.0%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1562728 237.1.1.8 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.85 71.0 6.52e-01 86.1% 100.0%
4277383 237.1.1.8 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.84 74.0 6.44e-01 89.8% 99.6%
1893388 237.1.1.8 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.84 70.0 6.37e-01 85.5% 100.0%
157262 237.1.1.8 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.83 71.0 6.47e-01 88.0% 97.1%
4952387 237.1.1.0 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.83 50.0 5.95e-01 74.7% 84.9%
7440 237.1.1.8 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.83 69.0 6.45e-01 86.1% 100.0%
7442 237.1.1.8 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.81 71.0 6.42e-01 90.4% 99.5%
4157545 237.1.1.8 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.80 51.0 5.37e-01 74.1% 70.7%
308103 237.1.1.8 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.80 67.0 6.06e-01 86.7% 98.1%
2034328 237.1.1.8 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.78 67.0 6.14e-01 89.8% 97.6%
2770556 237.1.1.8 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.77 66.0 5.97e-01 89.2% 98.1%
308110 237.1.1.8 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.76 65.0 5.92e-01 90.4% 98.6%
4563308 237.1.1.8 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.70 55.0 5.01e-01 79.5% 100.0%
3280971 237.1.1.8 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.70 55.0 5.69e-01 81.3% 98.7%
183506 237.1.1.8 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.70 52.0 4.55e-01 75.9% 80.5%
3714758 237.1.1.0 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.70 51.0 4.37e-01 74.1% 50.6%
2402651 237.1.1.8 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.68 51.0 4.74e-01 76.5% 77.5%
2410012 237.1.1.2 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ART 0.67 50.0 4.86e-01 77.1% 83.2%
3612144 237.1.1.0 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.64 51.0 3.91e-01 83.1% 72.4%
3561821 237.1.1.2 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ART 0.64 49.0 4.21e-01 78.3% 69.8%
3847347 237.1.1.2 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ART 0.62 47.0 4.13e-01 76.5% 70.9%
1687631 237.1.1.8 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.61 57.0 5.13e-01 98.8% 90.5%
4259249 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.53 28.0 3.62e-01 83.1% 88.4%
4139867 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.53 28.0 3.53e-01 100.0% 86.3%
4248625 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.53 29.0 3.60e-01 100.0% 87.0%
4681723 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.53 27.0 3.46e-01 100.0% 85.3%
4128879 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.52 28.0 3.59e-01 84.9% 89.5%
4323001 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.52 28.0 3.47e-01 100.0% 84.0%
4069101 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.52 28.0 3.46e-01 100.0% 84.0%
4886608 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.52 28.0 3.57e-01 84.9% 89.5%
4052507 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.52 28.0 3.61e-01 84.3% 90.5%
4597893 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.52 27.0 3.44e-01 100.0% 84.0%
4083330 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.52 27.0 3.45e-01 100.0% 86.3%
3253514 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.52 28.0 3.49e-01 100.0% 86.0%
4037542 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.52 28.0 3.50e-01 100.0% 86.0%
4120365 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.51 27.0 3.45e-01 84.9% 85.0%
4065090 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.51 27.0 3.50e-01 83.7% 89.5%
4324086 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.51 27.0 3.48e-01 100.0% 89.5%
4670852 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.51 27.0 3.44e-01 83.7% 88.4%
4668753 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.50 27.0 3.41e-01 84.9% 86.0%
4197235 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.50 27.0 3.39e-01 100.0% 87.4%
4129323 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.50 27.0 3.48e-01 84.9% 90.5%
4399696 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.50 27.0 3.41e-01 84.9% 89.5%
D6 medium residues 686-752
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5wtzA01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.68 56.0 3.83e-01 100.0% 27.7%
2q0oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 47.0 4.70e-01 97.0% 71.6%
7oq4Z01 1.20.120.950 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062 0.60 41.0 3.65e-01 71.6% 85.7%
3al0B03 1.10.10.410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.56 43.0 4.47e-01 86.6% 95.2%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 42.0 4.12e-01 86.6% 98.6%
1h99A02 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.53 39.0 3.44e-01 79.1% 95.3%
6nmnA02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.51 43.0 3.61e-01 100.0% 89.1%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4030763 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.68 46.0 4.73e-01 100.0% 73.8%
4967694 101.1.1.552 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF5806 0.66 58.0 5.62e-01 100.0% 92.0%
4961017 101.1.1.552 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF5806 0.65 57.0 5.55e-01 100.0% 92.0%
4008778 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.58 37.0 4.06e-01 86.6% 80.0%
3931317 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.54 37.0 2.69e-01 71.6% 80.0%
4938260 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.53 35.0 3.70e-01 88.1% 78.3%
3700540 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 37.0 3.56e-01 77.6% 68.8%
4002075 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.51 42.0 4.25e-01 92.5% 92.3%
3569524 108.1.1.48 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_9 0.51 37.0 3.52e-01 77.6% 91.3%