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MZ326855.1__QZI85577.1__CPT_Suzuki_004__00004
Bact-VirMZ326855.1__QZI85577.1__CPT_Suzuki_004__00004
Identity
- Accession:
- MZ326855 ↗
- Kingdom:
- phage
Quality
56.7
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Casjensviridae›
Sanovirus›
Stenotrophomonas_phage_Suzuki
TaxID: 2859663
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-38
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1gaxA05 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.85 | 74.0 | 5.87e-01 | 100.0% | 49.3% |
| 3tufA00 | 1.10.287.4300 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Stage III sporulation protein AH-like | 0.82 | 65.0 | 4.55e-01 | 100.0% | 27.8% |
| 3k1hA00 | 3.30.1120.180 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Flagellar FLiS export co-chaperone, HP1076 | 0.81 | 61.0 | 4.24e-01 | 100.0% | 26.1% |
| 3anwB00 | 1.20.58.2050 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.79 | 57.0 | 3.73e-01 | 100.0% | 17.9% |
| 2yevC00 | 6.10.280.110 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.78 | 67.0 | 5.62e-01 | 100.0% | 84.1% |
| 3rx6A00 | 1.20.58.1090 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phage polarity suppression protein monomer | 0.77 | 66.0 | 4.14e-01 | 100.0% | 19.3% |
| 3hr0B01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.76 | 64.0 | 5.07e-01 | 100.0% | 45.6% |
| 2xmoA02 | 1.10.246.180 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.75 | 59.0 | 4.41e-01 | 86.1% | 37.2% |
| 4i8oA03 | 1.10.8.1130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial toxin RNase RnlA/LsoA, C-terminal Dmd-binding domain | 0.75 | 58.0 | 4.73e-01 | 86.1% | 46.3% |
| 4arvA02 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.75 | 60.0 | 4.25e-01 | 100.0% | 34.9% |
| 2lmgA00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.74 | 58.0 | 4.84e-01 | 100.0% | 48.6% |
| 1lfkA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.74 | 58.0 | 3.31e-01 | 100.0% | 8.5% |
| 7byjA01 | 1.20.80.10 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.73 | 61.0 | 4.30e-01 | 100.0% | 31.7% |
| 2efeA01 | 1.10.246.120 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.71 | 63.0 | 4.81e-01 | 100.0% | 88.9% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.70 | 55.0 | 4.52e-01 | 100.0% | 45.9% |
| 4i9oA00 | 1.10.246.20 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain | 0.68 | 56.0 | 4.41e-01 | 97.2% | 44.9% |
| 3ff5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 46.0 | 4.06e-01 | 75.0% | 50.0% |
| 4xukA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.66 | 50.0 | 2.98e-01 | 100.0% | 11.0% |
| 2oblA02 | 1.20.1270.330 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.66 | 50.0 | 4.11e-01 | 88.9% | 43.2% |
| 2jaeA03 | 1.20.1440.240 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.61 | 49.0 | 3.80e-01 | 100.0% | 49.5% |
| 3m4xA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.59 | 46.0 | 2.82e-01 | 100.0% | 36.4% |
| 2gsqA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.56 | 40.0 | 3.21e-01 | 100.0% | 37.0% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4118522 | 605.1.1.137 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › RRP36 | 0.96 | 88.0 | 5.56e-01 | 100.0% | 23.4% |
| 3412777 | 109.4.1.150 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ufd2P_core | 0.96 | 86.0 | 4.55e-01 | 100.0% | 4.1% |
| 4420423 | 5094.1.1.1 ↗ | a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › OmpH | 0.94 | 84.0 | 5.36e-01 | 100.0% | 23.2% |
| 3599594 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.93 | 83.0 | 4.51e-01 | 100.0% | 6.4% |
| 4487944 | 605.1.1.131 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Val_tRNA-synt_C | 0.93 | 84.0 | 6.81e-01 | 100.0% | 55.4% |
| 3249513 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.92 | 83.0 | 7.38e-01 | 100.0% | 72.0% |
| 3393826 | 3812.1.1.0 ↗ | alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE | 0.92 | 82.0 | 6.55e-01 | 100.0% | 52.2% |
| 4563674 | 192.7.1.4 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Val_tRNA-synt_C | 0.92 | 82.0 | 6.49e-01 | 100.0% | 51.4% |
| 4070346 | 192.8.1.343 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Val_tRNA-synt_C | 0.91 | 81.0 | 6.62e-01 | 100.0% | 55.4% |
| 4387824 | 192.7.1.4 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Val_tRNA-synt_C | 0.91 | 82.0 | 6.48e-01 | 100.0% | 51.4% |
| 4520081 | 192.5.1.20 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › Val_tRNA-synt_C | 0.91 | 81.0 | 6.78e-01 | 100.0% | 60.0% |
| 4631780 | 192.7.1.4 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Val_tRNA-synt_C | 0.91 | 83.0 | 6.86e-01 | 100.0% | 60.0% |
| 4147837 | 192.1.1.41 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › Val_tRNA-synt_C | 0.91 | 81.0 | 6.58e-01 | 100.0% | 55.4% |
| 4383676 | 3922.1.1.67 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Val_tRNA-synt_C | 0.91 | 81.0 | 6.45e-01 | 100.0% | 51.4% |
| 4367294 | 192.5.1.0 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat | 0.91 | 80.0 | 7.00e-01 | 100.0% | 66.7% |
| 4013585 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.91 | 78.0 | 6.30e-01 | 100.0% | 51.4% |
| 4181677 | 192.29.1.272 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Val_tRNA-synt_C | 0.90 | 81.0 | 6.42e-01 | 100.0% | 51.4% |
| 3528259 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.90 | 80.0 | 6.37e-01 | 100.0% | 52.2% |
| 4373203 | 605.1.1.131 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Val_tRNA-synt_C | 0.90 | 79.0 | 6.47e-01 | 100.0% | 55.4% |
| 4185385 | 605.2.1.6 ↗ | alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › Val_tRNA-synt_C | 0.90 | 79.0 | 6.29e-01 | 100.0% | 51.4% |
| 3481299 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.89 | 81.0 | 6.53e-01 | 100.0% | 55.4% |
| 3177225 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.89 | 77.0 | 5.71e-01 | 100.0% | 40.0% |
| 4420750 | 192.7.1.4 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Val_tRNA-synt_C | 0.89 | 78.0 | 6.23e-01 | 100.0% | 51.4% |
| 4503822 | 3922.1.1.67 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Val_tRNA-synt_C | 0.89 | 79.0 | 6.34e-01 | 100.0% | 52.9% |
| 4587769 | 192.7.1.4 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Val_tRNA-synt_C | 0.89 | 78.0 | 6.40e-01 | 100.0% | 55.4% |
| 3589137 | 192.7.1.4 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Val_tRNA-synt_C | 0.88 | 76.0 | 6.16e-01 | 100.0% | 51.4% |
| 4299170 | 192.7.1.4 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Val_tRNA-synt_C | 0.88 | 80.0 | 6.28e-01 | 100.0% | 51.4% |
| 3885007 | 3922.1.1.67 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Val_tRNA-synt_C | 0.88 | 78.0 | 6.19e-01 | 100.0% | 51.4% |
| 3186805 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.88 | 76.0 | 6.11e-01 | 100.0% | 51.4% |
| 3708367 | 192.7.1.4 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Val_tRNA-synt_C | 0.85 | 76.0 | 6.02e-01 | 100.0% | 51.4% |
| 4667710 | 630.1.1.1 ↗ | a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › Rubis-subs-bind | 0.84 | 69.0 | 4.50e-01 | 100.0% | 21.3% |
| 4023967 | 2007.6.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › Ribosomal_S2 | 0.83 | 70.0 | 4.30e-01 | 100.0% | 16.4% |
| 3457370 | 109.4.1.112 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Xpo1 | 0.80 | 70.0 | 3.98e-01 | 100.0% | 10.7% |
| 3475897 | 7022.1.1.1 ↗ | alpha bundles › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › MBOAT | 0.79 | 64.0 | 4.10e-01 | 100.0% | 18.9% |
| 3868177 | 304.48.1.11 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol | 0.79 | 61.0 | 3.99e-01 | 100.0% | 20.0% |
| 1956188 | 3615.1.1.1 ↗ | alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Fzo_mitofusin | 0.78 | 67.0 | 5.35e-01 | 100.0% | 58.9% |
| 3783911 | 633.6.1.24 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › FKS1_dom2 | 0.76 | 63.0 | 4.18e-01 | 100.0% | 24.1% |
| 3680188 | 2484.1.1.50 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT | 0.75 | 57.0 | 3.56e-01 | 88.9% | 15.1% |
| 3595330 | 7022.1.1.0 ↗ | alpha bundles › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein | 0.73 | 61.0 | 3.80e-01 | 100.0% | 17.2% |
| 3519081 | 101.1.17.16 ↗ | alpha arrays › HTH › HTH › FF domain › FF_RHG35_4th | 0.73 | 59.0 | 5.05e-01 | 94.4% | 86.7% |
| 3968853 | 2498.4.1.0 ↗ | mixed a+b and a/b › Zincin-like › HSP90 C-terminal domain (C-terminal part of Pfam 00183) › HSP90 C-terminal domain (C-terminal part of Pfam 00183) | 0.73 | 57.0 | 3.83e-01 | 94.4% | 22.0% |
| 3557452 | 5069.1.1.4 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Ferric_reduct | 0.71 | 56.0 | 3.45e-01 | 88.9% | 24.2% |
| 3411199 | 5048.1.1.1 ↗ | alpha complex topology › Aquaporin-like › Aquaporin-like › Aquaporin-like › MIP | 0.70 | 60.0 | 3.67e-01 | 100.0% | 34.8% |
| 3971163 | 109.1.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C | 0.69 | 57.0 | 4.01e-01 | 100.0% | 30.0% |
| 4029880 | 101.1.16.1 ↗ | alpha arrays › HTH › HTH › Ribosomal protein L11, C-terminal domain › Ribosomal_L11 | 0.69 | 55.0 | 3.87e-01 | 88.9% | 60.2% |
| 3829964 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.67 | 55.0 | 4.63e-01 | 100.0% | 51.4% |
| 3831147 | 4207.1.2.103 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › K-box | 0.67 | 54.0 | 4.24e-01 | 100.0% | 37.9% |
| 1927453 | 3615.1.1.0 ↗ | alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain | 0.67 | 46.0 | 4.02e-01 | 100.0% | 43.9% |
| 4322176 | 2004.1.1.109 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PPK2 | 0.65 | 53.0 | 3.01e-01 | 100.0% | 10.9% |
| 3176081 | 101.1.16.1 ↗ | alpha arrays › HTH › HTH › Ribosomal protein L11, C-terminal domain › Ribosomal_L11 | 0.65 | 53.0 | 4.12e-01 | 94.4% | 95.2% |
| 3504908 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.64 | 51.0 | 3.91e-01 | 100.0% | 83.0% |
| 4890923 | 148.1.3.12 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_8 | 0.55 | 40.0 | 3.38e-01 | 100.0% | 41.9% |
D2
medium
residues 51-129