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MZ326858.1__QYW01968.1__CPT_Pepon018__00018

Bact-Vir

MZ326858.1__QYW01968.1__CPT_Pepon018__00018

Identity

Accession:
MZ326858 ↗
Kingdom:
phage

Quality

69.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-54
PDB
D2 high residues 64-126
PDB
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.78 62.0 5.93e-01 100.0% 76.1%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.67 46.0 3.99e-01 100.0% 45.5%
1mgpA02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.66 55.0 4.42e-01 100.0% 47.9%
2d9vA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 49.0 4.18e-01 98.4% 50.9%
3n54B01 6.20.190.10 Special › Other non-globular › Nuclear Transport Factor 2; Chain: A, › Nutrient germinant receptor protein C, domain 1 0.63 41.0 4.15e-01 73.0% 68.9%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.60 48.0 3.63e-01 88.9% 62.3%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.59 39.0 4.34e-01 73.0% 93.5%
3eehA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 39.0 3.25e-01 73.0% 37.9%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 43.0 3.67e-01 100.0% 45.3%
4khbC00 2.30.29.210 Mainly Beta › Roll › PH-domain like › FACT complex subunit Spt16p/Cdc68p 0.56 46.0 3.95e-01 100.0% 54.7%
1gttA01 3.90.850.10 Alpha Beta › Alpha-Beta Complex › Fumarylacetoacetate hydrolase; domain 2 › Fumarylacetoacetase-like, C-terminal domain 0.56 48.0 3.37e-01 100.0% 68.7%
4u9cA01 2.40.128.250 Mainly Beta › Beta Barrel › Lipocalin › 0.56 44.0 3.55e-01 87.3% 47.6%
1zj8A04 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.55 47.0 3.69e-01 100.0% 54.1%
4gxbA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 43.0 3.76e-01 98.4% 54.8%
2cx7A00 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.55 36.0 2.93e-01 87.3% 33.3%
3lo7A02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 45.0 3.03e-01 100.0% 23.8%
3nwsA01 2.40.50.800 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 39.0 3.13e-01 81.0% 96.5%
2qtpA00 3.30.1330.110 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › BB2672 0.53 36.0 2.83e-01 71.4% 96.6%
4rlzA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.53 41.0 3.49e-01 87.3% 57.3%
3bf2A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.52 46.0 3.72e-01 100.0% 68.8%
1ukxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.52 43.0 3.43e-01 95.2% 51.8%
3f4rA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 42.0 3.42e-01 98.4% 85.9%
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.51 31.0 3.32e-01 71.4% 72.5%
2lrsA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 42.0 4.16e-01 98.4% 95.8%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3250014 264.1.1.9 beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.74 68.0 5.13e-01 100.0% 56.4%
3967666 2484.1.1.251 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF26691 0.66 56.0 3.74e-01 98.4% 24.1%
5060009 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.65 56.0 4.87e-01 100.0% 63.2%
5043209 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.64 50.0 3.83e-01 100.0% 36.0%
3473111 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.64 57.0 3.40e-01 100.0% 13.2%
5047349 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.63 50.0 4.42e-01 100.0% 58.9%
4979002 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.63 53.0 4.54e-01 100.0% 57.1%
5066117 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.63 54.0 4.72e-01 96.8% 64.2%
4984268 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.61 49.0 4.25e-01 100.0% 57.0%
4940142 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.60 45.0 4.17e-01 98.4% 62.4%
4950191 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.60 48.0 3.91e-01 93.7% 45.6%
3601615 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 42.0 2.70e-01 100.0% 13.6%
5020579 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 47.0 4.15e-01 96.8% 56.6%
3630433 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 47.0 3.95e-01 98.4% 51.3%
3410503 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 47.0 3.87e-01 98.4% 46.9%
3974132 4152.2.1.0 a+b two layers › Shew3726-like › Uncharacterized protein CV_2116 › Uncharacterized protein CV_2116 0.56 47.0 4.51e-01 100.0% 80.0%
3195099 220.1.1.9 beta barrels › PH domain-like › PH domain-like › PH domain-like › Voldacs 0.56 46.0 3.74e-01 98.4% 46.3%
5041479 206.1.3.21 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.55 41.0 2.94e-01 81.0% 44.2%
4629072 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.55 47.0 3.60e-01 100.0% 57.5%
3915999 389.1.3.0 few secondary structure elements › EGF-like › EGF-related › TNF receptor-like 0.55 36.0 3.85e-01 73.0% 78.2%
3841070 330.1.1.5 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.55 46.0 4.02e-01 100.0% 60.0%
3287295 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 39.0 3.46e-01 77.8% 52.2%
3344044 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 47.0 4.25e-01 100.0% 73.3%
3237220 220.1.1.84 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_15 0.54 43.0 3.57e-01 87.3% 60.9%
3354455 5.1.11.9 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › RAB3GAP2_N 0.54 40.0 2.43e-01 79.4% 18.4%
3270020 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.54 46.0 3.72e-01 100.0% 59.2%
3177726 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 45.0 3.32e-01 100.0% 38.9%
5072515 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.53 37.0 2.80e-01 74.6% 98.2%
3576877 389.1.3.21 few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TNFR_ELAPOR1_6th 0.52 35.0 2.62e-01 74.6% 28.7%
3695360 7579.1.1.40 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › T6SS_Tle1-like_cat 0.52 40.0 2.49e-01 88.9% 56.8%
3607882 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 42.0 3.68e-01 100.0% 59.1%
3487450 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.51 44.0 3.44e-01 100.0% 47.6%
3884062 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 36.0 2.37e-01 74.6% 46.5%
1503831 101.1.8.6 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › ResT-TelK_cat 0.51 41.0 3.43e-01 100.0% 57.5%
D3 high residues 133-180
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mgpA02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.68 59.0 4.42e-01 100.0% 45.5%
5xamA03 3.30.1360.200 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.66 56.0 4.20e-01 100.0% 63.5%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 55.0 4.14e-01 100.0% 38.6%
7tuvA02 2.40.50.700 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 50.0 4.15e-01 85.4% 100.0%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.63 50.0 4.10e-01 100.0% 45.5%
2dkhA03 3.40.30.20 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Phenol hydroxylase, C-terminal dimerisation domain 0.59 47.0 3.16e-01 95.8% 66.2%
3mtsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 41.0 3.81e-01 75.0% 75.8%
3t7zA00 3.30.420.220 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.58 45.0 3.50e-01 89.6% 52.1%
4eo3A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 45.0 3.47e-01 100.0% 81.9%
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.57 41.0 3.39e-01 85.4% 40.0%
3f42A00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.56 42.0 3.35e-01 79.2% 41.9%
2v5gA00 3.40.1690.10 Alpha Beta › 3-Layer(aba) Sandwich › name from scop › secretion proteins EscU 0.56 45.0 3.47e-01 93.8% 39.2%
2cdqA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.56 43.0 3.86e-01 100.0% 90.5%
3ly1D01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.56 45.0 3.36e-01 91.7% 82.9%
3g8wB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 44.0 3.07e-01 89.6% 51.8%
3qp1A00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.54 43.0 3.11e-01 100.0% 42.7%
3mazA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 43.0 3.61e-01 100.0% 65.7%
2i00A02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 43.0 3.00e-01 89.6% 52.2%
4cy8A03 3.40.30.120 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.54 42.0 3.14e-01 100.0% 55.7%
5i47B03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.54 39.0 3.14e-01 100.0% 40.0%
2v6eA03 1.10.443.30 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Telomere resolvase 0.53 41.0 2.78e-01 100.0% 20.0%
6hgcA01 3.40.532.10 Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase 0.53 42.0 2.91e-01 95.8% 24.6%
2xmjA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 38.0 3.54e-01 81.2% 95.2%
3ephA03 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.52 38.0 3.74e-01 87.5% 75.9%
5r0dB01 2.60.34.20 Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › 0.51 45.0 3.23e-01 100.0% 69.2%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 42.0 2.51e-01 100.0% 17.0%
2ls5A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.50 39.0 2.93e-01 100.0% 73.6%
3c0kA03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 40.0 2.62e-01 89.6% 21.0%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3739513 4351.1.1.1 alpha arrays › ATP12-like › ATP12-like › ATP12-like › ATP12 0.79 73.0 4.47e-01 100.0% 19.7%
3737229 2.1.1.86 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_Dis3 0.69 56.0 4.31e-01 91.7% 96.4%
3731233 220.1.1.202 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_FT_N 0.65 52.0 3.73e-01 100.0% 29.3%
3432130 825.1.1.0 beta complex topology › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins 0.64 51.0 3.36e-01 89.6% 45.5%
3606641 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.63 53.0 4.18e-01 100.0% 67.3%
4443103 296.1.1.3 a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › PF26540 0.63 46.0 3.73e-01 100.0% 38.2%
3895743 3615.1.1.7 alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › CD20 0.59 44.0 3.10e-01 89.6% 22.6%
4682319 1021.1.1.2 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › RNA_hel_CTD 0.59 49.0 3.80e-01 100.0% 40.0%
3516087 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 46.0 4.16e-01 97.9% 65.3%
185547 3407.1.1.3 mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop5_N 0.58 45.0 3.50e-01 89.6% 52.1%
3947081 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.58 47.0 4.41e-01 100.0% 78.1%
4023242 220.1.1.187 beta barrels › PH domain-like › PH domain-like › PH domain-like › VPS13_C 0.58 44.0 3.46e-01 100.0% 36.0%
4015062 210.1.1.0 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits 0.57 49.0 3.15e-01 100.0% 63.9%
3707160 219.1.1.15 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU 0.57 46.0 3.34e-01 100.0% 43.1%
3987428 3843.1.1.0 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.56 40.0 3.14e-01 75.0% 38.0%
3604284 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 45.0 3.78e-01 97.9% 53.7%
3593332 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.56 45.0 3.27e-01 100.0% 41.8%
5057903 2002.1.1.23 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH 0.56 45.0 2.80e-01 100.0% 74.2%
3691146 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.56 44.0 3.09e-01 100.0% 51.7%
3177726 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 43.0 2.98e-01 91.7% 67.6%
4882651 2003.1.2.22 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GMC_oxred_C 0.53 40.0 2.97e-01 83.3% 65.9%
3649351 4337.1.1.0 a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain 0.52 45.0 3.79e-01 100.0% 68.2%
4992389 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 45.0 3.61e-01 97.9% 93.7%
4312097 295.1.1.15 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › UPF0128 0.52 40.0 2.77e-01 87.5% 86.3%
5027324 206.1.3.3 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPDK_N 0.51 41.0 2.60e-01 100.0% 44.3%
4944154 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 43.0 3.28e-01 100.0% 76.0%
4979396 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.50 39.0 2.86e-01 89.6% 84.1%
3973968 7515.1.1.2 a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase 0.50 44.0 2.57e-01 100.0% 38.1%