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MZ326863.1__QYW02305.1__CPT_Paku_011__00011

Bact-Vir

MZ326863.1__QYW02305.1__CPT_Paku_011__00011

Identity

Accession:
MZ326863 ↗
Kingdom:
phage

Quality

76.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autonotataviridae› Pakuvirus› Burkholderia_phage_Paku

TaxID: 2859650

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-80
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4oa3A00 3.10.310.50 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.72 49.0 3.65e-01 71.4% 29.1%
2iexA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.69 46.0 4.75e-01 80.4% 76.5%
2ctqA01 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.68 50.0 4.23e-01 78.6% 52.1%
3w8hB00 1.10.12.70 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › 0.67 47.0 4.50e-01 75.0% 66.7%
2kw6A00 6.10.140.1300 Special › Helix non-globular › Helix Hairpins › 0.63 48.0 4.64e-01 87.5% 83.1%
1ks8A00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.63 52.0 3.19e-01 100.0% 39.5%
2yikA00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.62 51.0 3.04e-01 100.0% 36.3%
1jalA03 1.10.150.300 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain 0.59 43.0 3.89e-01 82.1% 54.3%
2n04A00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.58 48.0 4.03e-01 98.2% 70.5%
2r5sA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 41.0 3.70e-01 100.0% 95.5%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3455585 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.83 61.0 4.98e-01 78.6% 51.0%
4016179 371.1.1.0 ↗ few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 0.82 62.0 4.67e-01 80.4% 45.6%
4963338 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.76 55.0 5.43e-01 76.8% 76.7%
3597126 509.1.1.0 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.76 64.0 5.30e-01 94.6% 59.0%
3236421 616.1.1.21 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › DUF4473 0.74 62.0 5.61e-01 91.1% 74.7%
4598585 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.74 54.0 2.94e-01 76.8% 42.9%
5002258 109.7.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E 0.73 53.0 4.72e-01 98.2% 55.0%
3594871 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.70 59.0 4.26e-01 98.2% 59.4%
3823400 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.66 50.0 4.05e-01 80.4% 47.6%
3956336 245.2.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB 0.62 51.0 4.03e-01 92.9% 83.3%
3472718 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 47.0 3.72e-01 100.0% 65.0%
3955662 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.57 47.0 3.40e-01 96.4% 87.2%
3596822 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 45.0 3.78e-01 98.2% 82.7%