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MZ326863.1__QYW02339.1__CPT_Paku_045__00045

Bact-Vir

MZ326863.1__QYW02339.1__CPT_Paku_045__00045

Identity

Accession:
MZ326863 ↗
Kingdom:
phage

Quality

53.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-122
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01464.26 best SLT 44.1 2.00e-11 88.1% 72.7%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4yibA01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.88 83.0 7.44e-01 100.0% 85.4%
1qsaA03 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.88 83.0 7.14e-01 100.0% 82.1%
6cfcA01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.86 81.0 7.14e-01 98.3% 86.3%
4c5fA02 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.85 79.0 6.94e-01 99.2% 95.2%
4hjzA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.84 79.0 6.70e-01 100.0% 88.0%
3bkhA02 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.83 78.0 6.61e-01 100.0% 94.5%
3w6bB00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.81 76.0 6.87e-01 100.0% 86.3%
7k5cB01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.79 71.0 6.37e-01 95.8% 82.4%
2dqaA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.77 69.0 6.81e-01 94.9% 99.2%
1xsfA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.73 51.0 5.32e-01 95.8% 78.7%
1am7A00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.70 61.0 5.53e-01 93.2% 91.6%
1hfxA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.68 60.0 5.92e-01 100.0% 89.4%
4zpxA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.57 38.0 4.19e-01 83.9% 85.9%
1f1eA00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.55 49.0 4.56e-01 99.2% 100.0%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3979308 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.91 87.0 7.41e-01 100.0% 90.3%
3945171 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.89 86.0 7.87e-01 100.0% 83.4%
3289359 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.89 85.0 7.20e-01 100.0% 83.3%
4995668 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.89 76.0 7.50e-01 89.0% 96.7%
3965879 235.1.1.32 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT, PF27553 0.89 84.0 7.36e-01 100.0% 82.4%
3964630 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.88 76.0 6.73e-01 100.0% 65.9%
3941811 235.1.1.32 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT, PF27553 0.88 83.0 7.19e-01 100.0% 83.5%
3970721 235.1.1.0 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.87 82.0 7.06e-01 100.0% 82.3%
3978377 235.1.1.0 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.87 83.0 6.80e-01 100.0% 80.5%
4164050 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.86 83.0 6.67e-01 100.0% 76.6%
4515466 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.86 81.0 6.90e-01 100.0% 89.4%
3166094 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.86 81.0 6.94e-01 100.0% 92.0%
4321901 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.85 82.0 6.83e-01 100.0% 84.9%
3385979 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.85 82.0 6.76e-01 100.0% 72.6%
3969917 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.85 82.0 6.64e-01 100.0% 68.5%
4530587 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.85 80.0 6.78e-01 100.0% 87.0%
3839661 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.85 81.0 7.02e-01 100.0% 83.5%
4431057 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.85 80.0 7.41e-01 100.0% 88.3%
4010532 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.85 78.0 7.55e-01 97.5% 96.2%
2393514 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.85 79.0 6.64e-01 100.0% 84.7%
4942484 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.85 80.0 6.61e-01 100.0% 83.9%
3947473 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.85 80.0 7.27e-01 100.0% 81.3%
3985073 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.84 79.0 7.51e-01 100.0% 88.9%
3971115 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.83 78.0 6.80e-01 100.0% 87.1%
1175858 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.83 78.0 6.53e-01 100.0% 91.0%
5028353 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.83 77.0 6.61e-01 100.0% 87.2%
4258903 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.83 76.0 6.67e-01 97.5% 93.3%
3944103 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.82 77.0 6.55e-01 100.0% 82.2%
1005039 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.81 76.0 6.79e-01 100.0% 83.5%
1266923 235.1.1.0 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.80 76.0 6.89e-01 100.0% 87.4%
3945340 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.80 75.0 6.83e-01 98.3% 100.0%
4031083 235.1.1.14 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transglycosylas 0.80 53.0 6.43e-01 94.1% 100.0%
3254511 235.1.1.1 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Lys 0.80 62.0 6.56e-01 100.0% 90.5%
4455133 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.80 52.0 5.92e-01 96.6% 88.6%
3582448 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.79 72.0 6.97e-01 95.8% 93.8%
185214 235.1.1.14 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transglycosylas 0.77 52.0 5.91e-01 95.8% 92.0%
3389460 235.1.1.12 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Destabilase 0.76 65.0 6.20e-01 90.7% 90.4%
3205219 235.1.1.0 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.76 71.0 6.23e-01 100.0% 77.1%
4135695 235.1.1.0 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.75 50.0 5.89e-01 96.6% 98.8%
2647598 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.74 69.0 5.90e-01 100.0% 86.3%
4009649 632.3.1.13 alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain › DUF1615 0.74 68.0 6.15e-01 100.0% 80.5%
4978508 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.59 38.0 4.27e-01 83.9% 86.7%
4952132 148.1.3.29 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › LonB_AAA-LID 0.59 39.0 4.39e-01 83.9% 90.0%
D2 high residues 232-293
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1a6jB00 3.40.930.10 Alpha Beta › 3-Layer(aba) Sandwich › Mannitol-specific EII; Chain A › Mannitol-specific EII; Chain A 0.70 49.0 3.61e-01 74.2% 86.6%
3hmfA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.69 56.0 4.63e-01 91.9% 76.7%
4heoA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.67 52.0 5.50e-01 85.5% 98.2%
1kxpD04 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.65 50.0 4.74e-01 87.1% 96.1%
5u1aL00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.63 50.0 3.65e-01 87.1% 45.8%
6xz3A01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.63 48.0 3.98e-01 85.5% 73.5%
2z3xA00 6.10.10.80 Special › Helix non-globular › Helicase, Ruva Protein; domain 3 › Small, acid-soluble spore protein, alpha/beta type-like 0.61 42.0 4.40e-01 72.6% 94.6%
1sdoA00 3.40.91.20 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.60 40.0 2.86e-01 71.0% 32.3%
2bvlA01 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 43.0 3.92e-01 77.4% 73.3%
1v9mA03 1.20.1690.10 Mainly Alpha › Up-down Bundle › V-type ATP synthase subunit C fold › V-type ATP synthase subunit C domain 0.57 44.0 3.86e-01 83.9% 81.2%
2oh3A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.53 41.0 3.22e-01 87.1% 93.1%
2qytA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.52 38.0 3.35e-01 82.3% 94.1%
3h51A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 37.0 2.85e-01 75.8% 60.6%
3bxjA02 1.10.506.20 Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › 0.51 40.0 3.53e-01 88.7% 73.5%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3345113 2007.1.3.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.78 36.0 2.75e-01 90.3% 21.5%
3582903 311.1.1.0 a+b three layers › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein 0.74 59.0 4.04e-01 87.1% 78.1%
3110045 311.1.1.0 a+b three layers › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein 0.74 55.0 3.93e-01 80.6% 79.4%
3479571 311.1.1.0 a+b three layers › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein 0.72 57.0 3.92e-01 85.5% 85.9%
5007621 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.71 55.0 4.79e-01 83.9% 83.2%
5007199 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.71 58.0 4.51e-01 88.7% 64.6%
3978028 311.1.1.1 a+b three layers › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › PTS_EIIA_2 0.71 50.0 3.77e-01 74.2% 93.8%
3619577 192.5.1.0 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat 0.71 44.0 3.92e-01 83.9% 43.3%
5063635 311.1.1.1 a+b three layers › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › PTS_EIIA_2 0.70 55.0 4.24e-01 85.5% 96.4%
4034224 632.19.1.3 alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 0.69 51.0 4.75e-01 77.4% 93.3%
3164523 311.1.1.1 a+b three layers › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › PTS_EIIA_2 0.68 48.0 3.62e-01 75.8% 91.6%
3222919 311.1.1.0 a+b three layers › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein 0.67 53.0 3.76e-01 87.1% 86.3%
3988586 311.1.1.1 a+b three layers › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › PTS_EIIA_2 0.67 49.0 3.72e-01 79.0% 94.4%
3412881 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.64 50.0 4.71e-01 88.7% 100.0%
3262798 3788.1.1.0 alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) 0.64 49.0 4.34e-01 82.3% 60.0%
4969968 4333.1.1.0 a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain 0.64 45.0 2.86e-01 74.2% 72.5%
4935885 304.48.1.3 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B 0.63 51.0 3.18e-01 87.1% 69.6%
3587318 311.1.1.1 a+b three layers › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › PTS_EIIA_2 0.63 45.0 3.42e-01 75.8% 91.3%
3998578 142.1.1.41 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › RabGAP-TBC 0.63 46.0 4.58e-01 80.6% 96.9%
3692552 5071.3.1.0 alpha bundles › cytochrome bc1 complex 11 kDa protein-like › DUF465 › DUF465 0.62 46.0 4.56e-01 79.0% 100.0%
3999832 541.1.1.2 alpha duplicates or obligate multimers › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dpy-30 0.62 32.0 3.51e-01 82.3% 60.0%
3710681 601.24.1.1 alpha bundles › Four-helical up-and-down bundle › FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) › FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) › FRB_dom 0.61 44.0 3.83e-01 79.0% 67.0%
3228717 103.4.1.1 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX 0.60 47.0 4.46e-01 87.1% 100.0%
3708959 601.24.1.1 alpha bundles › Four-helical up-and-down bundle › FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) › FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) › FRB_dom 0.60 43.0 3.83e-01 79.0% 70.5%
3288075 2004.1.1.600 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn, AAA_21 0.58 48.0 2.80e-01 90.3% 45.4%
3933111 601.24.1.0 alpha bundles › Four-helical up-and-down bundle › FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) › FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) 0.57 42.0 3.63e-01 82.3% 67.6%
3829000 3161.1.1.1 alpha duplicates or obligate multimers › LOB domain › LOB domain › LOB domain › LOB 0.53 40.0 3.85e-01 87.1% 80.0%
D3 high residues 605-642_656-759
PDB
D4 medium residues 1017-1162
PDB
D5 medium residues 1292-1304_1336-1476
PDB
D6 medium residues 1477-1554
PDB
D7 medium residues 1588-1640
PDB