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MZ326865.1__QYW02460.1__CPT_Sigurd_062__00062

Bact-Vir

MZ326865.1__QYW02460.1__CPT_Sigurd_062__00062

Identity

Accession:
MZ326865 ↗
Kingdom:
phage

Quality

92.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-84
PDB
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rtqA00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.71 57.0 3.92e-01 88.0% 45.7%
2nvmA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.70 52.0 4.83e-01 78.3% 64.4%
2nwvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.70 51.0 4.67e-01 78.3% 59.8%
3oc4B03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.67 52.0 4.58e-01 86.7% 57.0%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.66 47.0 3.71e-01 74.7% 96.4%
7wvzA03 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.64 43.0 2.98e-01 94.0% 21.5%
3icsA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 54.0 3.76e-01 91.6% 50.8%
4ae8D00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.63 45.0 3.62e-01 75.9% 41.8%
3b7kB01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.62 42.0 3.58e-01 71.1% 63.6%
4ywzB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 42.0 3.54e-01 72.3% 84.9%
3mxqC00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 44.0 3.86e-01 77.1% 78.4%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.60 40.0 3.79e-01 72.3% 55.9%
2gvhC01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.60 40.0 3.37e-01 92.8% 41.2%
6lgqC01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.60 43.0 3.75e-01 75.9% 74.0%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.60 42.0 3.67e-01 72.3% 75.8%
2nlvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.60 54.0 4.85e-01 98.8% 100.0%
3kg8A01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.60 39.0 3.37e-01 92.8% 41.5%
1ah5A03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.60 40.0 4.02e-01 71.1% 67.4%
3m2tA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.59 48.0 4.02e-01 90.4% 53.9%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.59 41.0 4.20e-01 72.3% 75.9%
2gvhB02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 38.0 3.44e-01 94.0% 47.9%
8gq6A01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.58 40.0 2.71e-01 71.1% 88.6%
6f1uK02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.57 41.0 3.49e-01 75.9% 46.9%
2bi0A01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 40.0 3.25e-01 94.0% 40.5%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.55 39.0 3.37e-01 75.9% 47.6%
3holA01 2.40.128.250 Mainly Beta › Beta Barrel › Lipocalin › 0.55 47.0 4.71e-01 95.2% 100.0%
1zhhB01 3.30.450.220 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › LuxQ periplasmic domain, N-terminal subdomain 0.54 38.0 3.16e-01 73.5% 82.2%
4u3vA00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.54 45.0 3.25e-01 91.6% 86.4%
1v3eA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.54 45.0 2.98e-01 100.0% 86.3%
5egjA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 48.0 3.76e-01 96.4% 56.3%
4djbA00 3.30.70.2870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 0.53 43.0 3.86e-01 92.8% 62.7%
2qkpD00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 40.0 3.49e-01 81.9% 75.4%
3wj2B00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 40.0 2.77e-01 81.9% 65.3%
4g79A00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.53 43.0 3.65e-01 92.8% 54.5%
1p0zA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 36.0 3.20e-01 73.5% 85.5%
3nqhA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 37.0 2.56e-01 74.7% 29.7%
4hrzB00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 3.67e-01 89.2% 78.9%
4jgwA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.52 39.0 3.16e-01 79.5% 48.1%
1in0A02 3.30.70.990 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YajQ-like, domain 2 0.52 45.0 4.41e-01 98.8% 100.0%
3qkgA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 43.0 3.55e-01 96.4% 70.1%
4ienA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 44.0 3.62e-01 96.4% 59.1%
2e56A00 2.60.40.770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 44.0 3.71e-01 96.4% 86.1%
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 42.0 4.03e-01 90.4% 83.2%
3caxA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 38.0 3.34e-01 83.1% 68.1%
1y7uA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 44.0 3.55e-01 96.4% 56.1%
2bbhA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.50 43.0 3.63e-01 100.0% 78.8%
6kmoB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 39.0 2.66e-01 85.5% 86.3%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4976589 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.72 46.0 4.46e-01 88.0% 56.8%
6661 4276.1.1.1 a+b two layers › XisI-like › XisI-like › XisI-like › XisI 0.70 52.0 4.83e-01 78.3% 64.4%
4115972 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.70 46.0 3.78e-01 92.8% 38.6%
3259640 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.67 45.0 4.22e-01 92.8% 57.0%
4206564 222.1.1.17 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.65 43.0 3.65e-01 92.8% 42.2%
4106050 316.1.1.6 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Mab-21 0.64 51.0 3.74e-01 90.4% 80.0%
3317524 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.63 47.0 3.56e-01 81.9% 95.4%
3208478 222.1.1.17 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.61 45.0 3.59e-01 92.8% 40.0%
3994973 101.1.12.3 alpha arrays › HTH › HTH › HTH motif inserted in other structures › SAS-6_N 0.61 46.0 3.91e-01 78.3% 68.5%
5055280 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.61 49.0 4.09e-01 88.0% 55.2%
4013398 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.61 45.0 3.62e-01 92.8% 42.7%
4012208 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.60 43.0 3.50e-01 92.8% 40.7%
3474795 223.2.1.34 a+b three layers › Profilin-like › profilin-like › profilin-like › NPR2 0.60 44.0 3.33e-01 77.1% 40.5%
4525648 222.1.1.17 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.60 44.0 3.62e-01 92.8% 45.0%
2855566 223.1.1.51 a+b three layers › Profilin-like › sensor domains › sensor domains › MCP-like_PDC_1 0.59 41.0 3.27e-01 73.5% 83.9%
4964494 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.59 43.0 3.93e-01 78.3% 81.7%
4058654 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.59 40.0 3.83e-01 72.3% 58.6%
2698437 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.59 40.0 3.40e-01 72.3% 41.0%
4429745 222.1.1.17 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.59 44.0 3.56e-01 92.8% 42.7%
4971131 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 43.0 2.67e-01 77.1% 41.4%
4930368 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.58 42.0 3.87e-01 77.1% 87.3%
3249154 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.58 47.0 3.53e-01 88.0% 82.5%
4945424 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 42.0 3.66e-01 77.1% 98.5%
4999855 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 40.0 3.67e-01 74.7% 86.4%
3839019 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 41.0 2.81e-01 78.3% 65.4%
4297447 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.56 39.0 3.36e-01 73.5% 55.7%
5019574 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.56 42.0 3.82e-01 81.9% 81.7%
5005723 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.55 45.0 3.18e-01 90.4% 32.1%
4955365 223.1.1.27 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 0.55 42.0 3.61e-01 81.9% 74.1%
5034774 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.55 40.0 3.56e-01 77.1% 73.6%
3176281 896.1.1.3 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP9-21 0.55 37.0 3.87e-01 90.4% 77.3%
3940520 223.2.1.34 a+b three layers › Profilin-like › profilin-like › profilin-like › NPR2 0.55 40.0 3.30e-01 77.1% 41.3%
3720034 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 39.0 3.35e-01 75.9% 100.0%
5000965 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.55 42.0 4.17e-01 100.0% 78.9%
4973550 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 40.0 3.61e-01 78.3% 82.5%
4342739 223.1.1.16 a+b three layers › Profilin-like › sensor domains › sensor domains › LuxQ-periplasm 0.55 40.0 2.85e-01 77.1% 68.7%
4965501 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.55 37.0 3.64e-01 71.1% 64.4%
4518553 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.55 40.0 3.64e-01 80.7% 80.0%
3613921 330.1.1.22 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF26536 0.54 40.0 3.51e-01 89.2% 52.0%
3600840 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 40.0 3.82e-01 79.5% 76.0%
3577516 2484.1.1.1 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.54 40.0 2.90e-01 78.3% 61.1%
5034773 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.54 40.0 3.71e-01 80.7% 87.3%
4997576 223.1.1.27 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 0.54 41.0 3.73e-01 80.7% 84.5%
5041343 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 39.0 4.05e-01 75.9% 84.0%
5046056 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.54 40.0 3.45e-01 80.7% 76.3%
3779994 223.2.1.34 a+b three layers › Profilin-like › profilin-like › profilin-like › NPR2 0.53 39.0 3.16e-01 78.3% 40.0%
3407350 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.53 47.0 3.56e-01 96.4% 46.5%
4931487 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.53 39.0 3.50e-01 80.7% 80.0%
4460237 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.53 35.0 3.65e-01 71.1% 76.0%
3727917 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.53 47.0 3.45e-01 97.6% 39.5%
4986810 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.52 38.0 3.48e-01 79.5% 78.3%
3281686 331.3.1.27 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF2505 0.52 40.0 3.35e-01 86.7% 48.5%
3640057 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.52 45.0 3.35e-01 96.4% 47.4%
3989572 223.1.1.27 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 0.51 39.0 3.28e-01 83.1% 69.8%
4009799 274.1.1.4 a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSI 0.51 38.0 3.56e-01 88.0% 62.9%
5067842 223.1.1.27 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 0.51 38.0 3.31e-01 83.1% 69.3%
3998298 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 40.0 3.04e-01 85.5% 82.9%