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MZ326867.1__QYW02475.1__CPT_Silvanus_001__00001

Bact-Vir

MZ326867.1__QYW02475.1__CPT_Silvanus_001__00001

Identity

Accession:
MZ326867 ↗
Kingdom:
phage

Quality

77.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stenotrophomonas_phage_Silvanus

TaxID: 2859659

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-59
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cmpA00 1.10.10.1400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Terminase, small subunit, N-terminal DNA-binding domain, HTH motif 0.90 80.0 7.94e-01 96.3% 94.6%
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.78 52.0 5.25e-01 83.3% 69.1%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.77 61.0 6.11e-01 100.0% 85.7%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 55.0 5.28e-01 83.3% 66.7%
1gdtB03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.74 50.0 5.30e-01 77.8% 84.4%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 52.0 4.64e-01 85.2% 53.8%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 61.0 5.37e-01 100.0% 67.5%
4gvpA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.69 61.0 4.08e-01 100.0% 28.6%
6v7xB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 59.0 5.92e-01 98.1% 100.0%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 60.0 5.51e-01 100.0% 79.2%
3ulqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 59.0 5.84e-01 98.1% 94.8%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 60.0 5.37e-01 100.0% 77.6%
2cobA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 47.0 5.03e-01 83.3% 90.9%
6jqsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 59.0 5.58e-01 100.0% 91.0%
3h20A04 1.10.1240.50 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.68 60.0 5.08e-01 100.0% 88.8%
2m8gX00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 48.0 4.48e-01 88.9% 60.0%
4jcyA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.66 54.0 4.51e-01 88.9% 78.3%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 56.0 5.12e-01 100.0% 77.3%
2q0oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 56.0 5.26e-01 100.0% 88.1%
5y9sC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 53.0 4.72e-01 94.4% 78.0%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 54.0 4.78e-01 100.0% 71.3%
2k9sA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 52.0 4.16e-01 88.9% 44.9%
6uglB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 54.0 5.38e-01 98.1% 89.7%
1b9mB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 55.0 4.56e-01 98.1% 60.6%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 54.0 5.19e-01 98.1% 90.5%
3e7lA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 46.0 4.48e-01 87.0% 70.0%
5y2vC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 54.0 4.74e-01 100.0% 78.8%
2esnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 53.0 4.62e-01 100.0% 71.9%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.62 52.0 4.04e-01 100.0% 47.3%
5cz2G00 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.61 41.0 4.46e-01 87.0% 92.7%
1jhgA00 1.10.1270.10 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like 0.60 50.0 4.22e-01 100.0% 56.4%
2ao9I01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 47.0 4.24e-01 100.0% 59.8%
4fx0A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 46.0 3.73e-01 98.1% 41.0%
2hdoA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 43.0 4.14e-01 88.9% 71.9%
1z2iA01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.56 41.0 3.51e-01 79.6% 95.7%
3py8A04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.55 45.0 3.45e-01 100.0% 81.2%
4x0qA04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.54 45.0 3.46e-01 100.0% 81.2%
4jndA01 1.10.1740.220 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.50 41.0 3.14e-01 92.6% 65.4%
2nq2A00 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.50 42.0 2.68e-01 100.0% 64.6%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4321283 101.1.1.378 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Terminase_2 0.96 87.0 8.67e-01 96.3% 94.5%
4973199 101.1.1.60 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.86 70.0 6.76e-01 100.0% 80.0%
1834406 101.1.3.2 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Terminase_2 0.85 74.0 7.36e-01 96.3% 94.6%
4974224 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.82 64.0 6.27e-01 98.1% 78.3%
4008959 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.79 52.0 5.20e-01 81.5% 67.3%
3604669 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.79 53.0 5.32e-01 77.8% 69.1%
4987653 101.1.2.139 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_23 0.78 58.0 6.16e-01 98.1% 95.6%
1035813 101.1.6.2 ↗ alpha arrays › HTH › HTH › TrpR › HTH_7 0.77 61.0 6.21e-01 100.0% 90.4%
3590732 101.1.1.364 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_49 0.74 50.0 5.37e-01 83.3% 86.7%
3977377 101.1.2.836 ↗ alpha arrays › HTH › HTH › winged helix domain › Terminase_5 0.72 61.0 4.89e-01 100.0% 48.6%
3974013 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.71 63.0 6.08e-01 98.1% 90.0%
4131887 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.70 61.0 5.46e-01 100.0% 74.7%
4143289 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.70 55.0 5.56e-01 92.6% 85.5%
4993585 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 55.0 5.31e-01 96.3% 76.7%
3283074 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.70 61.0 5.28e-01 100.0% 68.2%
3693390 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.69 57.0 5.59e-01 100.0% 85.0%
138024 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.69 61.0 5.66e-01 100.0% 85.3%
3972270 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.69 60.0 5.56e-01 100.0% 84.3%
3962431 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.69 60.0 5.45e-01 100.0% 78.7%
3953111 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.69 59.0 5.48e-01 98.1% 81.4%
3289034 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.69 61.0 5.82e-01 100.0% 93.7%
3969657 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.69 60.0 5.44e-01 100.0% 78.7%
2332937 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.68 60.0 5.41e-01 100.0% 79.7%
2475319 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.68 59.0 5.58e-01 100.0% 91.0%
3279743 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.68 60.0 5.53e-01 100.0% 91.4%
3976103 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.68 59.0 5.58e-01 100.0% 87.7%
5021231 101.1.1.544 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF1670 0.68 58.0 5.09e-01 100.0% 90.6%
3975610 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.67 59.0 5.45e-01 100.0% 78.6%
5018267 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 58.0 5.10e-01 96.3% 76.2%
3976506 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.67 58.0 5.27e-01 100.0% 76.0%
4007717 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.67 56.0 5.05e-01 98.1% 72.5%
3971154 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.67 58.0 5.41e-01 100.0% 81.4%
3286659 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.67 58.0 5.39e-01 100.0% 87.1%
3946608 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.67 59.0 5.44e-01 100.0% 82.9%
4964802 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 47.0 4.59e-01 85.2% 68.3%
1095020 101.1.1.18 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.67 48.0 4.48e-01 88.9% 60.0%
3971977 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.67 58.0 5.14e-01 100.0% 73.8%
4071326 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.67 57.0 5.10e-01 100.0% 76.2%
4551350 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.66 57.0 4.81e-01 100.0% 62.1%
5010276 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.66 53.0 4.10e-01 92.6% 40.8%
4958468 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.66 57.0 5.56e-01 98.1% 91.7%
3289886 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.66 56.0 4.60e-01 100.0% 58.1%
3289143 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.65 55.0 4.80e-01 98.1% 68.2%
2761 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.65 54.0 4.78e-01 100.0% 71.3%
3946548 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.65 56.0 4.79e-01 100.0% 74.4%
4133453 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 50.0 5.02e-01 92.6% 85.5%
5057140 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 56.0 5.41e-01 98.1% 96.7%
2759 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.64 54.0 5.14e-01 98.1% 87.7%
3619451 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.64 49.0 4.69e-01 94.4% 72.3%
3964047 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.64 56.0 4.45e-01 100.0% 83.6%
3964882 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.64 56.0 4.18e-01 100.0% 86.7%
4178355 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.63 53.0 4.48e-01 100.0% 60.0%
3964524 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.63 56.0 3.89e-01 100.0% 89.7%
4010187 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.63 54.0 4.64e-01 100.0% 74.4%
3969666 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.63 52.0 4.54e-01 98.1% 71.1%
4664006 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.63 50.0 4.39e-01 94.4% 71.1%
3959738 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.62 52.0 4.43e-01 100.0% 58.9%
4241531 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.61 51.0 4.81e-01 100.0% 84.3%
4466704 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.61 52.0 4.33e-01 100.0% 63.0%
3991300 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.60 49.0 4.38e-01 100.0% 63.7%
3295940 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.59 45.0 4.48e-01 81.5% 87.3%
4964648 2008.1.1.59 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.59 52.0 3.41e-01 100.0% 29.4%
3330299 4070.1.1.4 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50B 0.58 42.0 2.83e-01 79.6% 46.3%
3963536 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.56 45.0 3.72e-01 98.1% 83.5%
3990779 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 46.0 3.77e-01 100.0% 49.1%
3963336 2484.1.1.107 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 0.55 46.0 3.17e-01 100.0% 92.1%
3280686 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.55 44.0 3.80e-01 98.1% 60.0%
3955106 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.53 43.0 3.80e-01 98.1% 66.7%
D2 high residues 85-137
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hojA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.73 53.0 4.24e-01 77.4% 72.8%
3tufA00 1.10.287.4300 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Stage III sporulation protein AH-like 0.69 49.0 3.86e-01 75.5% 36.5%
1cmjA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.68 57.0 3.36e-01 92.5% 14.0%
1gwiA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.68 57.0 3.39e-01 94.3% 13.7%
1bd3A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.68 56.0 3.67e-01 92.5% 75.4%
2rkkA01 1.25.40.270 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein vta1 0.67 46.0 3.33e-01 73.6% 43.6%
1lfkA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.66 55.0 3.29e-01 90.6% 14.9%
1hqoA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.63 49.0 3.85e-01 92.5% 42.0%
3behB01 1.20.120.540 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels 0.63 47.0 3.76e-01 84.9% 49.6%
2qyuA02 1.25.40.300 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Putative secreted effector protein 0.62 45.0 3.11e-01 84.9% 21.5%
7nc3F01 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.60 47.0 3.79e-01 90.6% 80.7%
2w3cA02 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.60 55.0 3.41e-01 100.0% 66.4%
1wn0A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.59 44.0 3.45e-01 86.8% 35.9%
3layF00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.58 45.0 4.06e-01 88.7% 60.3%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.58 44.0 3.52e-01 86.8% 93.2%
4c0eA01 1.25.40.790 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 43.0 2.85e-01 92.5% 47.3%
3kkbA00 1.20.120.880 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain 0.56 42.0 3.26e-01 84.9% 38.1%
3akjA02 1.10.1070.20 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › 0.52 39.0 2.77e-01 88.7% 72.1%
1f81A00 1.20.1020.10 Mainly Alpha › Up-down Bundle › CREB-binding Protein; Chain A › TAZ domain 0.51 35.0 3.05e-01 77.4% 43.7%
3craA02 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.51 39.0 3.23e-01 100.0% 48.4%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3894562 611.3.1.0 ↗ alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.78 50.0 3.89e-01 71.7% 31.8%
3707790 109.4.1.152 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RPN7 0.77 57.0 4.03e-01 77.4% 42.7%
3875308 611.3.1.1 ↗ alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Med26 0.77 52.0 3.50e-01 71.7% 22.6%
3438255 622.4.1.0 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.76 52.0 4.59e-01 71.7% 52.0%
3257891 611.3.1.1 ↗ alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Med26 0.75 52.0 3.77e-01 73.6% 26.2%
3382096 611.3.1.1 ↗ alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Med26 0.72 54.0 3.55e-01 79.2% 22.0%
3190774 316.1.1.25 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Nrap_D4 0.71 58.0 3.81e-01 88.7% 21.9%
4100012 327.13.1.5 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › SpoIIIAH 0.68 47.0 3.72e-01 75.5% 35.6%
3838594 7023.1.1.0 ↗ alpha bundles › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein 0.67 46.0 3.53e-01 71.7% 31.2%
4166693 7013.1.1.1 ↗ alpha bundles › Ribosome assembly factor Efg1-like › Ribosome assembly factor Efg1-like › Ribosome assembly factor Efg1-like › Efg1 0.67 46.0 3.25e-01 75.5% 21.6%
4020944 2498.1.1.12 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M4,Peptidase_M4_C 0.67 50.0 3.02e-01 83.0% 12.1%
3226696 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 55.0 3.84e-01 100.0% 71.1%
3592341 3877.1.1.0 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.65 54.0 3.58e-01 100.0% 23.7%
5056432 607.1.1.0 ↗ alpha arrays › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 0.64 48.0 3.67e-01 81.1% 33.6%
3866264 109.4.1.2027 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2, TPR_EMC2 0.64 50.0 3.71e-01 92.5% 43.9%
3783600 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.61 43.0 3.44e-01 75.5% 35.5%
3408277 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.58 42.0 3.40e-01 81.1% 38.3%
3491114 101.1.10.6 ↗ alpha arrays › HTH › HTH › Cyclin-like › RB_A 0.58 44.0 3.04e-01 92.5% 39.1%
3619200 192.15.1.76 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › CUPID 0.57 44.0 3.26e-01 86.8% 29.7%
377521 603.1.1.7 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › KinB_sensor 0.57 43.0 3.33e-01 84.9% 37.5%
4017631 330.3.1.2 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › MRP-S28 0.57 42.0 2.86e-01 83.0% 19.6%
3880244 603.2.1.24 ↗ alpha bundles › STAT-like › STAT › STAT › TBCA_PH 0.57 43.0 3.26e-01 90.6% 74.8%
3966605 601.4.1.84 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › KinB_sensor 0.56 42.0 3.32e-01 84.9% 40.0%
3285485 191.1.1.64 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › DUF4254 0.56 46.0 3.43e-01 100.0% 38.1%
4317199 603.5.1.1 ↗ alpha bundles › STAT-like › FlgN-like › FlgN-like › FlgN 0.56 43.0 3.39e-01 88.7% 48.8%
3744220 611.3.1.0 ↗ alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.55 45.0 3.59e-01 92.5% 80.9%
3356095 601.37.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Photosystem II lipoprotein Psb27 › Photosystem II lipoprotein Psb27 › PSII_Pbs27 0.54 40.0 3.19e-01 83.0% 37.5%
4300897 5094.1.1.1 ↗ a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › OmpH 0.53 43.0 3.31e-01 92.5% 87.7%
4569984 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.53 42.0 2.55e-01 98.1% 32.9%
4259224 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.53 40.0 3.04e-01 88.7% 31.6%
3276281 109.4.1.470 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS2 0.53 41.0 2.54e-01 96.2% 48.7%
5082904 3594.1.1.0 ↗ alpha bundles › Oncogenic effector CagA domain III › Oncogenic effector CagA domain III › Oncogenic effector CagA domain III 0.53 37.0 2.97e-01 75.5% 76.5%
3933449 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.53 40.0 3.57e-01 94.3% 54.4%
3601586 7516.1.1.40 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Stealth_CR2 0.52 37.0 2.31e-01 77.4% 19.1%
4058363 611.3.1.8 ↗ alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Arm 0.52 36.0 2.97e-01 77.4% 70.0%
3934904 109.4.1.106 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CPL 0.51 42.0 2.47e-01 100.0% 32.6%