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MZ326867.1__QYW02535.1__CPT_Silvanus_061__00061
Bact-VirMZ326867.1__QYW02535.1__CPT_Silvanus_061__00061
Identity
- Accession:
- MZ326867 ↗
- Kingdom:
- phage
Quality
57.1
mean pLDDT
Taxonomy
TaxID: 2859659
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 84-175
D2
medium
residues 4-67
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kd3A02 | 1.10.150.210 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Phosphoserine phosphatase; domain 2 | 0.65 | 37.0 | 3.82e-01 | 71.9% | 60.0% |
| 7k98E03 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.60 | 41.0 | 4.03e-01 | 70.3% | 75.0% |
| 3u1dB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 49.0 | 3.86e-01 | 93.8% | 79.0% |
| 1af5A00 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.59 | 49.0 | 4.02e-01 | 95.3% | 72.2% |
| 5xyiK00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 46.0 | 4.15e-01 | 85.9% | 78.9% |
| 3c0wA02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.59 | 42.0 | 3.75e-01 | 79.7% | 62.1% |
| 2dchX02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.59 | 49.0 | 4.15e-01 | 95.3% | 63.1% |
| 2co5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 40.0 | 3.57e-01 | 70.3% | 75.0% |
| 2lepA00 | 3.30.70.2350 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 39.0 | 3.93e-01 | 70.3% | 74.6% |
| 5yk4A04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.57 | 37.0 | 2.97e-01 | 79.7% | 30.9% |
| 1b7yB01 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.56 | 38.0 | 3.74e-01 | 70.3% | 74.3% |
| 3wrwA02 | 3.40.50.12030 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Uncharacterised protein family UPF0261, NC domain | 0.56 | 46.0 | 3.36e-01 | 100.0% | 40.0% |
| 3c9gA01 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.56 | 45.0 | 3.84e-01 | 100.0% | 94.4% |
| 4p72A04 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.56 | 40.0 | 3.81e-01 | 76.6% | 68.4% |
| 3l4jA04 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.55 | 37.0 | 3.26e-01 | 70.3% | 55.9% |
| 4dezA01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.55 | 42.0 | 3.74e-01 | 85.9% | 77.8% |
| 2kx2A00 | 3.30.780.30 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › | 0.55 | 39.0 | 3.48e-01 | 76.6% | 56.2% |
| 2fclA00 | 3.30.460.40 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.55 | 42.0 | 3.30e-01 | 89.1% | 93.6% |
| 3jamK00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 41.0 | 3.75e-01 | 87.5% | 81.2% |
| 2kwaA00 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.54 | 40.0 | 3.59e-01 | 82.8% | 62.4% |
| 2e9yB00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.54 | 44.0 | 2.80e-01 | 87.5% | 26.3% |
| 3cjnA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 45.0 | 3.50e-01 | 95.3% | 58.9% |
| 3hyiA01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.53 | 45.0 | 3.27e-01 | 98.4% | 34.6% |
| 6lw5A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.52 | 39.0 | 2.66e-01 | 87.5% | 62.3% |
| 2pq0A02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.52 | 38.0 | 3.37e-01 | 81.2% | 94.0% |
| 4by6D02 | 1.25.40.800 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.51 | 42.0 | 3.06e-01 | 100.0% | 53.3% |
| 1h2iA01 | 3.30.390.80 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 | 0.50 | 35.0 | 2.80e-01 | 75.0% | 67.6% |
| 1vk8A00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 40.0 | 3.57e-01 | 89.1% | 89.2% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5032406 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.64 | 43.0 | 3.82e-01 | 70.3% | 54.7% |
| 5070090 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.64 | 49.0 | 4.35e-01 | 87.5% | 78.0% |
| 4612385 | 101.1.9.5 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 | 0.62 | 42.0 | 3.83e-01 | 70.3% | 61.2% |
| 3979431 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.62 | 41.0 | 3.20e-01 | 70.3% | 48.0% |
| 5024398 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.61 | 41.0 | 3.31e-01 | 70.3% | 53.1% |
| 3506323 | 12.1.1.98 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Helicase_C_3 | 0.59 | 42.0 | 3.50e-01 | 75.0% | 67.8% |
| 2106037 | 101.1.2.47 ↗ | alpha arrays › HTH › HTH › winged helix domain › S10_plectin | 0.59 | 46.0 | 4.15e-01 | 85.9% | 78.9% |
| 5065568 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 40.0 | 3.22e-01 | 70.3% | 60.0% |
| 1159602 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.59 | 49.0 | 4.13e-01 | 95.3% | 62.5% |
| 4118091 | 101.1.9.5 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 | 0.58 | 39.0 | 3.68e-01 | 70.3% | 65.0% |
| 4975301 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.58 | 39.0 | 3.75e-01 | 70.3% | 68.0% |
| 4946346 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.58 | 39.0 | 3.30e-01 | 70.3% | 47.3% |
| 3390067 | 101.1.9.5 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 | 0.58 | 39.0 | 3.59e-01 | 70.3% | 60.0% |
| None | — | 0.57 | 47.0 | 2.83e-01 | 100.0% | 88.3% | |
| 4993130 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.57 | 47.0 | 4.55e-01 | 95.3% | 88.0% |
| 4945179 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 40.0 | 3.16e-01 | 76.6% | 67.6% |
| 4947615 | 3604.1.1.0 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain | 0.56 | 38.0 | 3.85e-01 | 70.3% | 83.1% |
| 4973726 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 38.0 | 3.23e-01 | 70.3% | 63.5% |
| 5029221 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.56 | 46.0 | 3.94e-01 | 92.2% | 66.7% |
| 4955611 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.56 | 41.0 | 3.61e-01 | 81.2% | 81.7% |
| 3676148 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.56 | 39.0 | 3.27e-01 | 76.6% | 62.4% |
| 3955662 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.56 | 45.0 | 3.44e-01 | 98.4% | 98.3% |
| 5008984 | 101.1.9.5 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 | 0.55 | 37.0 | 3.37e-01 | 70.3% | 56.7% |
| 4104601 | 327.19.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › MutL_C | 0.54 | 39.0 | 3.64e-01 | 82.8% | 58.8% |
| 3717555 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.54 | 41.0 | 2.67e-01 | 82.8% | 57.2% |
| 3958566 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.54 | 36.0 | 3.36e-01 | 71.9% | 82.2% |
| 4978934 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.54 | 43.0 | 3.91e-01 | 93.8% | 74.7% |
| 3990199 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.54 | 38.0 | 2.43e-01 | 76.6% | 79.5% |
| 4934140 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.54 | 43.0 | 3.64e-01 | 92.2% | 69.6% |
| 4025072 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.53 | 33.0 | 2.81e-01 | 79.7% | 33.0% |
| 4996524 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.53 | 43.0 | 3.15e-01 | 93.8% | 34.9% |
| 3787125 | 101.1.2.106 ↗ | alpha arrays › HTH › HTH › winged helix domain › Tam41_Mmp37 | 0.52 | 37.0 | 2.81e-01 | 76.6% | 70.6% |
| 3426611 | 7581.1.1.41 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Chal_sti_synt_N, Chal_sti_synt_C, FAE1_CUT1_RppA, ACP_syn_III | 0.52 | 40.0 | 2.53e-01 | 84.4% | 58.6% |
| 4094511 | 304.48.1.22 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GCH_III | 0.52 | 40.0 | 3.34e-01 | 84.4% | 74.8% |
| 3987638 | 304.48.1.49 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GGDEF_GdpP | 0.52 | 40.0 | 3.15e-01 | 87.5% | 64.7% |
| 4041570 | 327.19.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › MutL_C | 0.52 | 37.0 | 3.27e-01 | 84.4% | 50.5% |
| 5028488 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.52 | 43.0 | 3.73e-01 | 95.3% | 65.7% |
| 4579829 | 304.48.1.49 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GGDEF_GdpP | 0.52 | 39.0 | 3.09e-01 | 84.4% | 67.3% |
| 4971836 | 304.48.1.22 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GCH_III | 0.52 | 40.0 | 3.39e-01 | 85.9% | 75.5% |
| 4372180 | 304.48.1.49 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GGDEF_GdpP | 0.52 | 39.0 | 3.05e-01 | 84.4% | 67.3% |
| 3200375 | 101.1.2.569 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF28722 | 0.51 | 43.0 | 2.85e-01 | 93.8% | 34.2% |
| 3635393 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 43.0 | 3.44e-01 | 93.8% | 72.3% |
| 5053763 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 39.0 | 3.59e-01 | 85.9% | 86.7% |
| 3530542 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.51 | 37.0 | 2.46e-01 | 81.2% | 55.8% |
| 4175039 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.51 | 36.0 | 3.79e-01 | 73.4% | 92.7% |
| 3450050 | 7581.1.1.25 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › FAE1_CUT1_RppA, ACP_syn_III_C | 0.51 | 39.0 | 2.39e-01 | 85.9% | 70.8% |
| 4988554 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.51 | 39.0 | 3.92e-01 | 84.4% | 98.5% |
| 4586587 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.50 | 38.0 | 3.90e-01 | 87.5% | 88.3% |
| 4930926 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.50 | 41.0 | 3.64e-01 | 92.2% | 66.3% |
| 3905833 | 304.8.1.54 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_13 | 0.50 | 39.0 | 3.49e-01 | 87.5% | 94.7% |