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MZ333456.2__QYI86529.1__X__00033

Bact-Vir

MZ333456.2__QYI86529.1__X__00033

Identity

Accession:
MZ333456 ↗
Kingdom:
phage

Quality

65.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vespunovirus› Enterococcus_phage_VEsP-1

TaxID: 2859528

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-66
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 46.0 4.21e-01 77.2% 48.7%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.72 44.0 3.45e-01 75.4% 28.9%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 51.0 4.74e-01 100.0% 68.1%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.64 44.0 4.35e-01 87.7% 66.7%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.63 37.0 4.13e-01 80.7% 75.0%
1bebA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 45.0 3.31e-01 77.2% 92.3%
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 47.0 3.25e-01 96.5% 24.1%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 45.0 3.88e-01 96.5% 50.0%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.61 39.0 3.55e-01 77.2% 50.0%
4uhvA01 2.30.110.50 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.56 45.0 3.12e-01 100.0% 25.6%
2xc8A00 2.60.40.2980 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 34.0 2.73e-01 78.9% 30.6%
4ivkA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 42.0 2.66e-01 94.7% 88.1%
2zdiC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 39.0 3.01e-01 89.5% 31.8%
4i1sB00 4.10.80.340 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › 0.52 33.0 3.42e-01 78.9% 69.2%
4ozjA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 35.0 2.93e-01 100.0% 38.5%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 41.0 3.42e-01 91.2% 69.5%
5ksoA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 42.0 3.16e-01 100.0% 78.9%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 39.0 3.33e-01 96.5% 49.0%
1zoqA00 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.50 35.0 2.57e-01 75.4% 89.0%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3482706 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 55.0 3.93e-01 94.7% 28.8%
3901117 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.69 45.0 3.12e-01 94.7% 21.1%
4554927 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.61 45.0 3.83e-01 100.0% 47.0%
3886492 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.60 46.0 4.24e-01 89.5% 64.0%
3611291 4.18.1.0 ↗ beta barrels › SH3 › Plus3 › Plus3 0.60 51.0 3.83e-01 100.0% 41.3%
4209798 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.60 46.0 4.07e-01 100.0% 57.6%
4964141 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.59 46.0 4.09e-01 100.0% 56.7%
3180837 1.1.5.30 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_oxase_2 0.58 49.0 3.27e-01 100.0% 28.0%
3590542 235.1.1.10 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase 0.58 45.0 3.34e-01 87.7% 67.5%
3218545 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.57 48.0 4.27e-01 96.5% 71.8%
4312484 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.57 43.0 3.62e-01 100.0% 46.7%
4001211 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 39.0 3.52e-01 75.4% 61.5%
4964819 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.55 47.0 3.85e-01 100.0% 60.0%
3839023 4070.1.1.0 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like 0.54 38.0 3.19e-01 75.4% 81.9%
3591908 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 44.0 3.26e-01 100.0% 35.6%
4069101 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.53 40.0 3.37e-01 100.0% 47.0%
4982354 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.53 36.0 3.55e-01 94.7% 64.6%
4636302 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 43.0 3.45e-01 100.0% 46.1%
3874892 389.1.1.50 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_PEAR1L 0.52 32.0 2.93e-01 77.2% 48.0%
3277197 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.51 41.0 3.67e-01 100.0% 90.5%
3606192 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 39.0 2.46e-01 91.2% 85.3%
5054484 304.11.1.0 ↗ a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.50 34.0 3.26e-01 94.7% 58.6%