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MZ333462.1__QYS24482.1__X__00031
Bact-VirMZ333462.1__QYS24482.1__X__00031
Identity
- Accession:
- MZ333462 ↗
- Kingdom:
- phage
Quality
70.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Herelleviridae›
Schiekvirus›
Enterococcus_phage_GVEsP-1
TaxID: 2859564
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 124-167
Domain cluster:
rep: OP503988.1__UYL93170.1__WILDCAPE_63__00063__D54-96
D2
high
residues 186-248
Domain cluster:
representative
CATH (69)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2x4jA01 | 2.30.30.600 | Mainly Beta › Roll › SH3 type barrels. › | 0.77 | 52.0 | 4.40e-01 | 92.1% | 43.1% |
| 6bogA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.75 | 53.0 | 5.80e-01 | 92.1% | 90.4% |
| 4g54A01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.75 | 58.0 | 4.65e-01 | 100.0% | 42.4% |
| 6bhdA03 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 49.0 | 4.98e-01 | 90.5% | 73.0% |
| 2fjrA02 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.70 | 50.0 | 4.16e-01 | 100.0% | 42.5% |
| 3goxA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 51.0 | 5.56e-01 | 92.1% | 96.1% |
| 4x9cD00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 48.0 | 4.89e-01 | 92.1% | 76.7% |
| 4dq2A03 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 47.0 | 5.31e-01 | 92.1% | 97.9% |
| 3h8zA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 48.0 | 4.85e-01 | 93.7% | 73.4% |
| 2mysA01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.68 | 47.0 | 5.21e-01 | 92.1% | 93.8% |
| 2bzyA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.68 | 41.0 | 4.22e-01 | 88.9% | 62.9% |
| 4ytlA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 47.0 | 5.15e-01 | 92.1% | 92.0% |
| 7cfdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 49.0 | 4.68e-01 | 95.2% | 65.8% |
| 1b7tA02 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.67 | 47.0 | 5.13e-01 | 93.7% | 90.4% |
| 3fb9B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 58.0 | 5.22e-01 | 93.7% | 70.2% |
| 1dwnA00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.67 | 46.0 | 3.73e-01 | 73.0% | 69.3% |
| 2ej9A02 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 45.0 | 4.92e-01 | 90.5% | 91.8% |
| 4ii1A02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 47.0 | 4.94e-01 | 92.1% | 83.9% |
| 2xk0A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 46.0 | 4.54e-01 | 95.2% | 68.1% |
| 2do3A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 47.0 | 5.12e-01 | 95.2% | 94.1% |
| 5i4eA01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.65 | 42.0 | 4.74e-01 | 84.1% | 91.3% |
| 1ex4B02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.65 | 46.0 | 4.73e-01 | 95.2% | 79.7% |
| 1ts9A00 | 2.30.30.210 | Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 | 0.63 | 48.0 | 4.14e-01 | 95.2% | 52.0% |
| 2in5A00 | 2.40.360.10 | Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like | 0.63 | 53.0 | 3.81e-01 | 95.2% | 83.6% |
| 2f5kA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 47.0 | 5.16e-01 | 90.5% | 100.0% |
| 7afrX02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.63 | 47.0 | 4.77e-01 | 93.7% | 85.0% |
| 1kq1H00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 48.0 | 4.75e-01 | 93.7% | 78.8% |
| 2fmlA02 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.62 | 49.0 | 3.66e-01 | 87.3% | 84.8% |
| 4mtnA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.62 | 40.0 | 4.08e-01 | 87.3% | 66.7% |
| 3h8zA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 41.0 | 4.48e-01 | 85.7% | 89.6% |
| 2vb6A01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.61 | 45.0 | 4.76e-01 | 95.2% | 90.7% |
| 3e8lC00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.61 | 49.0 | 3.66e-01 | 93.7% | 89.8% |
| 3k0xA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 48.0 | 4.12e-01 | 87.3% | 83.8% |
| 4fk5A02 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.60 | 43.0 | 2.79e-01 | 96.8% | 16.0% |
| 3mxnB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 47.0 | 3.69e-01 | 85.7% | 80.9% |
| 4c5eC02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 53.0 | 4.59e-01 | 100.0% | 79.2% |
| 1w1hD00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.59 | 49.0 | 3.90e-01 | 95.2% | 50.4% |
| 6epkA02 | 3.30.67.10 | Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 | 0.59 | 45.0 | 4.38e-01 | 100.0% | 76.1% |
| 3d31A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 41.0 | 4.65e-01 | 81.0% | 100.0% |
| 4iimA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.58 | 47.0 | 4.90e-01 | 100.0% | 98.2% |
| 3d3rA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 43.0 | 3.91e-01 | 92.1% | 59.0% |
| 2v43A01 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.58 | 48.0 | 3.56e-01 | 96.8% | 79.2% |
| 2z1cB00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 44.0 | 4.24e-01 | 82.5% | 73.0% |
| 1u1sA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 45.0 | 4.53e-01 | 96.8% | 83.3% |
| 1okeB02 | 3.30.67.10 | Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 | 0.58 | 44.0 | 4.21e-01 | 100.0% | 70.1% |
| 3p54A02 | 3.30.67.10 | Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 | 0.57 | 45.0 | 4.37e-01 | 100.0% | 77.5% |
| 2hzmA02 | 2.20.140.20 | Mainly Beta › Single Sheet › q64v53_bacfr protein fold › | 0.57 | 47.0 | 4.35e-01 | 98.4% | 95.3% |
| 1go3E01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 44.0 | 3.91e-01 | 85.7% | 92.6% |
| 2yyzA02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.56 | 42.0 | 4.40e-01 | 84.1% | 89.7% |
| 1ywuA00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.55 | 42.0 | 3.38e-01 | 84.1% | 59.2% |
| 2g7jA00 | 3.90.1150.40 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Protein of unknown function DUF2002 | 0.55 | 44.0 | 3.59e-01 | 85.7% | 82.1% |
| 6iikB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.54 | 44.0 | 2.84e-01 | 95.2% | 91.9% |
| 1awoA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.54 | 42.0 | 4.39e-01 | 93.7% | 98.2% |
| 3go5A01 | 2.40.50.330 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.54 | 38.0 | 3.71e-01 | 76.2% | 81.7% |
| 1y71A00 | 2.30.30.430 | Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain | 0.53 | 45.0 | 3.73e-01 | 93.7% | 54.1% |
| 4adiA02 | 3.30.67.20 | Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Rubella membrane glycoprotein E1, domain 2 | 0.53 | 44.0 | 4.04e-01 | 100.0% | 70.5% |
| 1ecsA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.53 | 42.0 | 3.36e-01 | 85.7% | 77.5% |
| 2krsA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 41.0 | 4.26e-01 | 88.9% | 100.0% |
| 2hbpA00 | 2.30.30.700 | Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 | 0.52 | 41.0 | 4.05e-01 | 96.8% | 83.3% |
| 3h09B02 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.52 | 42.0 | 2.56e-01 | 93.7% | 16.9% |
| 2rdeA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.52 | 46.0 | 3.82e-01 | 100.0% | 92.8% |
| 4n4iA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 46.0 | 4.10e-01 | 100.0% | 85.6% |
| 1lc0A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.52 | 43.0 | 3.32e-01 | 93.7% | 61.9% |
| 1vjvA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.51 | 41.0 | 2.72e-01 | 95.2% | 92.4% |
| 1xovA03 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.51 | 32.0 | 3.15e-01 | 88.9% | 55.6% |
| 1nkiA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.51 | 41.0 | 3.16e-01 | 85.7% | 64.2% |
| 1b23P03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.51 | 39.0 | 3.46e-01 | 93.7% | 57.4% |
| 3h41A02 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.50 | 44.0 | 4.31e-01 | 100.0% | 97.1% |
| 3rriA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.50 | 40.0 | 3.12e-01 | 85.7% | 73.3% |
ECOD (91)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4963446 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.79 | 60.0 | 5.95e-01 | 92.1% | 76.9% |
| 4429179 | 4.1.1.175 ↗ | beta barrels › SH3 › SH3 › SH3 › MSSS | 0.79 | 50.0 | 5.78e-01 | 92.1% | 91.1% |
| 4009281 | 219.1.1.65 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GspA_C39-like | 0.78 | 60.0 | 5.05e-01 | 100.0% | 49.5% |
| 4972872 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.78 | 53.0 | 6.07e-01 | 92.1% | 97.8% |
| 139951 | 4.1.1.125 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5607 | 0.77 | 52.0 | 5.59e-01 | 92.1% | 83.0% |
| 4342488 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.77 | 54.0 | 5.42e-01 | 92.1% | 73.0% |
| 3510526 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.77 | 57.0 | 6.01e-01 | 92.1% | 89.1% |
| 4550511 | 4.1.1.175 ↗ | beta barrels › SH3 › SH3 › SH3 › MSSS | 0.76 | 45.0 | 5.19e-01 | 87.3% | 84.4% |
| 224033 | 219.1.1.65 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GspA_C39-like | 0.75 | 58.0 | 4.76e-01 | 100.0% | 45.7% |
| 4191690 | 4.1.1.98 ↗ | beta barrels › SH3 › SH3 › SH3 › ProQ_C | 0.72 | 47.0 | 4.93e-01 | 90.5% | 74.1% |
| 5010981 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.72 | 43.0 | 4.59e-01 | 85.7% | 69.1% |
| 3782293 | 4.1.1.170 ↗ | beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind | 0.71 | 48.0 | 5.08e-01 | 93.7% | 80.0% |
| 3875218 | 4.1.1.128 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_4 | 0.71 | 50.0 | 4.96e-01 | 90.5% | 70.8% |
| 4422251 | 4.1.1.98 ↗ | beta barrels › SH3 › SH3 › SH3 › ProQ_C | 0.71 | 46.0 | 5.02e-01 | 88.9% | 84.0% |
| 4149821 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 50.0 | 5.10e-01 | 93.7% | 78.3% |
| 3877485 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.70 | 49.0 | 4.42e-01 | 93.7% | 54.1% |
| 4321173 | 4.1.1.98 ↗ | beta barrels › SH3 › SH3 › SH3 › ProQ_C | 0.70 | 48.0 | 4.99e-01 | 93.7% | 77.6% |
| 3914746 | 4.1.1.128 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_4 | 0.70 | 49.0 | 4.73e-01 | 90.5% | 65.7% |
| 3275404 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 50.0 | 5.10e-01 | 92.1% | 78.3% |
| 3976863 | 4.11.1.3 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Phage_CI_C | 0.69 | 49.0 | 4.22e-01 | 100.0% | 45.7% |
| 1281147 | 9.23.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › Lipocalin_3 | 0.69 | 49.0 | 4.28e-01 | 76.2% | 50.0% |
| 3622846 | 4.1.1.33 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_N | 0.69 | 50.0 | 5.45e-01 | 100.0% | 96.0% |
| 4662294 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 48.0 | 5.09e-01 | 92.1% | 83.6% |
| 4029082 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 45.0 | 4.97e-01 | 92.1% | 86.0% |
| 1482194 | 4.1.1.96 ↗ | beta barrels › SH3 › SH3 › SH3 › Hfq | 0.69 | 48.0 | 4.89e-01 | 92.1% | 76.7% |
| 4949848 | 4.1.1.364 ↗ | beta barrels › SH3 › SH3 › SH3 › GatD_N | 0.69 | 49.0 | 5.21e-01 | 98.4% | 87.3% |
| 4432348 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.68 | 49.0 | 4.80e-01 | 93.7% | 70.6% |
| 4957350 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 47.0 | 4.65e-01 | 92.1% | 69.2% |
| 3617111 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.68 | 48.0 | 4.27e-01 | 93.7% | 52.2% |
| 4499953 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.68 | 49.0 | 5.02e-01 | 93.7% | 80.0% |
| 3230083 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.67 | 47.0 | 4.17e-01 | 93.7% | 51.1% |
| 4890270 | 4.1.1.33 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_N | 0.67 | 47.0 | 4.96e-01 | 93.7% | 85.2% |
| 3562168 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.67 | 48.0 | 4.21e-01 | 93.7% | 52.2% |
| 3218198 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 46.0 | 4.89e-01 | 90.5% | 81.8% |
| 4332042 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 49.0 | 4.79e-01 | 100.0% | 71.4% |
| 3795121 | 4.1.1.110 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_FRX1 | 0.67 | 48.0 | 4.78e-01 | 95.2% | 73.8% |
| 3389169 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.67 | 47.0 | 4.30e-01 | 93.7% | 55.3% |
| 3854862 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.67 | 47.0 | 4.08e-01 | 93.7% | 48.4% |
| 5064457 | 4.7.1.0 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 | 0.67 | 47.0 | 4.60e-01 | 95.2% | 67.1% |
| 5057445 | 4.7.1.1 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 | 0.67 | 49.0 | 4.43e-01 | 100.0% | 57.6% |
| 4627519 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 42.0 | 4.89e-01 | 85.7% | 100.0% |
| 3768094 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.66 | 47.0 | 3.99e-01 | 93.7% | 44.8% |
| 5034040 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 49.0 | 5.21e-01 | 100.0% | 90.9% |
| 5004476 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 51.0 | 5.10e-01 | 100.0% | 80.0% |
| 3485965 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 48.0 | 4.97e-01 | 95.2% | 81.7% |
| 4954284 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 44.0 | 4.48e-01 | 92.1% | 71.7% |
| 3964733 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 47.0 | 4.93e-01 | 96.8% | 85.5% |
| 4163851 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.66 | 46.0 | 4.68e-01 | 92.1% | 76.7% |
| 3616243 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 47.0 | 4.94e-01 | 93.7% | 85.5% |
| 3261395 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 47.0 | 4.89e-01 | 93.7% | 82.8% |
| 4000280 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 48.0 | 5.10e-01 | 100.0% | 89.1% |
| 4368811 | 4.1.1.364 ↗ | beta barrels › SH3 › SH3 › SH3 › GatD_N | 0.65 | 48.0 | 5.02e-01 | 96.8% | 90.9% |
| 5001903 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 46.0 | 4.45e-01 | 92.1% | 67.1% |
| 139950 | 4.1.1.126 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5608 | 0.64 | 45.0 | 4.71e-01 | 95.2% | 83.9% |
| 5036621 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 45.0 | 4.77e-01 | 93.7% | 85.5% |
| 4975764 | 4.1.1.485 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF6897 | 0.64 | 46.0 | 4.49e-01 | 93.7% | 68.6% |
| 3584224 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.64 | 44.0 | 3.69e-01 | 92.1% | 42.9% |
| 4934734 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.64 | 49.0 | 3.86e-01 | 84.1% | 96.3% |
| 4953054 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 45.0 | 4.27e-01 | 92.1% | 62.7% |
| 3451171 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 48.0 | 4.78e-01 | 93.7% | 78.5% |
| 3484822 | 4.1.1.34 ↗ | beta barrels › SH3 › SH3 › SH3 › MBT | 0.63 | 51.0 | 4.73e-01 | 100.0% | 70.0% |
| 4941512 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 48.0 | 4.66e-01 | 100.0% | 74.3% |
| 4985969 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 45.0 | 4.59e-01 | 92.1% | 78.3% |
| 3604145 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 45.0 | 4.61e-01 | 93.7% | 80.0% |
| 1263519 | 4.1.1.96 ↗ | beta barrels › SH3 › SH3 › SH3 › Hfq | 0.63 | 48.0 | 4.85e-01 | 93.7% | 83.9% |
| 4185009 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.63 | 48.0 | 4.82e-01 | 100.0% | 81.5% |
| 5063433 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 44.0 | 4.72e-01 | 100.0% | 94.0% |
| 3550644 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 45.0 | 4.80e-01 | 95.2% | 89.1% |
| 4942673 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.62 | 49.0 | 4.14e-01 | 95.2% | 50.9% |
| 4406361 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.61 | 39.0 | 3.84e-01 | 79.4% | 58.6% |
| 3339169 | 4.1.1.415 ↗ | beta barrels › SH3 › SH3 › SH3 › PNPOx_N | 0.61 | 47.0 | 4.35e-01 | 93.7% | 63.5% |
| 3387378 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.61 | 53.0 | 4.86e-01 | 100.0% | 76.5% |
| 135832 | 6.1.1.2 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Kunitz_legume | 0.61 | 49.0 | 3.66e-01 | 93.7% | 89.8% |
| 4874733 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 44.0 | 4.68e-01 | 95.2% | 90.7% |
| 3586953 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 47.0 | 4.71e-01 | 92.1% | 84.6% |
| 3648296 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.59 | 42.0 | 2.70e-01 | 96.8% | 14.8% |
| 4985754 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.59 | 37.0 | 3.23e-01 | 88.9% | 42.1% |
| 4359892 | 4.1.1.96 ↗ | beta barrels › SH3 › SH3 › SH3 › Hfq | 0.58 | 47.0 | 4.35e-01 | 96.8% | 70.0% |
| 4973749 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 42.0 | 4.12e-01 | 92.1% | 71.4% |
| 5022458 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.57 | 39.0 | 3.15e-01 | 71.4% | 34.6% |
| 5074142 | 2.14.1.0 ↗ | beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like | 0.56 | 45.0 | 4.24e-01 | 85.7% | 74.7% |
| 3795384 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 50.0 | 3.44e-01 | 100.0% | 38.6% |
| 4133979 | 2486.1.1.11 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › ECH_2 | 0.55 | 38.0 | 2.48e-01 | 73.0% | 22.0% |
| 3996278 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 48.0 | 3.95e-01 | 100.0% | 55.0% |
| 3614740 | 3794.1.1.0 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit | 0.55 | 44.0 | 3.60e-01 | 93.7% | 66.9% |
| 4955298 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.54 | 39.0 | 3.13e-01 | 77.8% | 96.3% |
| 3268760 | 220.4.1.6 ↗ | beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins › Peptidase_M8 | 0.54 | 39.0 | 3.87e-01 | 81.0% | 71.4% |
| 3217772 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 46.0 | 4.19e-01 | 95.2% | 84.7% |
| 3625264 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 47.0 | 4.13e-01 | 100.0% | 87.4% |
| 3231154 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 45.0 | 4.22e-01 | 100.0% | 87.5% |
| 3236014 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.50 | 41.0 | 2.69e-01 | 96.8% | 93.2% |
D3
medium
residues 3-43
Domain cluster:
representative
CATH (59)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.95 | 87.0 | 7.50e-01 | 100.0% | 67.2% |
| 4r42A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.92 | 81.0 | 5.10e-01 | 100.0% | 21.4% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.90 | 80.0 | 6.52e-01 | 100.0% | 55.4% |
| 4fzsA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.88 | 75.0 | 4.69e-01 | 100.0% | 19.1% |
| 2qf9A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.87 | 76.0 | 5.02e-01 | 100.0% | 25.6% |
| 3l8rA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.87 | 75.0 | 5.60e-01 | 100.0% | 42.2% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.86 | 75.0 | 6.70e-01 | 100.0% | 72.4% |
| 6lccA01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.86 | 74.0 | 4.25e-01 | 100.0% | 19.1% |
| 3hiuD00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.85 | 73.0 | 4.95e-01 | 100.0% | 27.0% |
| 4h63K00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.85 | 74.0 | 5.59e-01 | 100.0% | 44.9% |
| 3behB01 | 1.20.120.540 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels | 0.85 | 73.0 | 5.26e-01 | 100.0% | 35.0% |
| 1upkA01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.84 | 64.0 | 3.73e-01 | 85.4% | 10.9% |
| 1yo7A00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.82 | 69.0 | 5.03e-01 | 100.0% | 35.8% |
| 2e5yA02 | 1.20.5.440 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain | 0.81 | 68.0 | 6.67e-01 | 100.0% | 88.9% |
| 3tufA00 | 1.10.287.4300 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Stage III sporulation protein AH-like | 0.80 | 68.0 | 5.00e-01 | 100.0% | 38.3% |
| 3ddeB00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.80 | 68.0 | 4.14e-01 | 95.1% | 16.5% |
| 7zxkC01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.80 | 67.0 | 4.62e-01 | 100.0% | 27.3% |
| 3hr0B01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.78 | 66.0 | 5.42e-01 | 100.0% | 57.0% |
| 1st6A03 | 1.20.120.810 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vinculin, Vh2 four-helix bundle | 0.78 | 66.0 | 4.15e-01 | 100.0% | 22.3% |
| 2ynqB00 | 1.25.40.680 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain | 0.77 | 66.0 | 4.48e-01 | 100.0% | 27.8% |
| 2yfaA02 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.76 | 64.0 | 4.71e-01 | 100.0% | 35.3% |
| 4okvE00 | 6.10.140.1890 | Special › Helix non-globular › Helix Hairpins › | 0.75 | 66.0 | 5.68e-01 | 100.0% | 69.2% |
| 1lfkA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.75 | 64.0 | 3.74e-01 | 100.0% | 12.3% |
| 6xxvC00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.74 | 64.0 | 4.75e-01 | 100.0% | 79.3% |
| 2fcwA00 | 1.20.81.10 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain | 0.74 | 61.0 | 4.61e-01 | 100.0% | 37.7% |
| 1n5uA02 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.74 | 62.0 | 4.93e-01 | 100.0% | 50.0% |
| 4in3B00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.73 | 61.0 | 3.41e-01 | 100.0% | 7.8% |
| 2rkhA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.73 | 60.0 | 4.97e-01 | 95.1% | 51.3% |
| 4rg8A04 | 1.10.287.1240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.73 | 57.0 | 5.05e-01 | 92.7% | 59.7% |
| 1dqeA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.73 | 53.0 | 3.62e-01 | 85.4% | 23.4% |
| 1z72A00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.72 | 59.0 | 3.80e-01 | 100.0% | 19.0% |
| 2glzA00 | 3.30.1330.130 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › | 0.72 | 53.0 | 3.70e-01 | 97.6% | 23.5% |
| 2mpkA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.71 | 59.0 | 5.00e-01 | 100.0% | 55.4% |
| 1np7A02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.71 | 61.0 | 4.45e-01 | 100.0% | 39.5% |
| 3axjB02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.70 | 53.0 | 4.45e-01 | 100.0% | 45.9% |
| 2l37A00 | 6.10.250.890 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.70 | 57.0 | 5.65e-01 | 97.6% | 88.4% |
| 8be0A01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.70 | 61.0 | 3.89e-01 | 97.6% | 94.8% |
| 7wboA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.70 | 59.0 | 3.89e-01 | 97.6% | 32.2% |
| 4j0eA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.70 | 56.0 | 3.57e-01 | 90.2% | 21.3% |
| 3i2fA02 | 1.10.3020.10 | Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) | 0.69 | 51.0 | 4.14e-01 | 95.1% | 38.9% |
| 4hfvA01 | 1.20.1440.330 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.69 | 59.0 | 4.28e-01 | 97.6% | 35.9% |
| 6lumD01 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.69 | 58.0 | 4.17e-01 | 97.6% | 33.6% |
| 1b5lA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.68 | 54.0 | 3.84e-01 | 100.0% | 63.2% |
| 1w0bA01 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.68 | 55.0 | 4.44e-01 | 100.0% | 71.7% |
| 1f05A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.67 | 55.0 | 3.25e-01 | 92.7% | 20.8% |
| 2lqxA00 | 6.10.250.1700 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.67 | 49.0 | 4.94e-01 | 97.6% | 80.5% |
| 1rqgA02 | 2.170.220.10 | Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › | 0.66 | 47.0 | 3.28e-01 | 85.4% | 21.4% |
| 3ejbH02 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.65 | 52.0 | 3.29e-01 | 100.0% | 20.2% |
| 2o0yB02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.64 | 52.0 | 3.51e-01 | 97.6% | 87.0% |
| 4ei7A02 | 3.40.50.1440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain | 0.64 | 56.0 | 3.50e-01 | 100.0% | 89.7% |
| 5c8aA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.64 | 52.0 | 4.40e-01 | 100.0% | 53.8% |
| 2r18A02 | 1.10.8.880 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 | 0.63 | 49.0 | 4.36e-01 | 92.7% | 59.3% |
| 2gxaE01 | 1.10.10.510 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain | 0.62 | 51.0 | 4.33e-01 | 95.1% | 83.6% |
| 1tmxB00 | 2.60.130.10 | Mainly Beta › Sandwich › Protocatechuate 3,4-Dioxygenase, subunit A › Aromatic compound dioxygenase | 0.61 | 49.0 | 3.04e-01 | 95.1% | 13.6% |
| 5g5gB02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.61 | 53.0 | 4.06e-01 | 100.0% | 44.7% |
| 1yqyA01 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.59 | 51.0 | 3.29e-01 | 100.0% | 25.0% |
| 1u1jA01 | 3.20.20.210 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.59 | 48.0 | 2.82e-01 | 97.6% | 31.3% |
| 4gf0A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.58 | 44.0 | 3.50e-01 | 100.0% | 69.9% |
| 6w6jD01 | 1.10.1780.10 | Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain | 0.52 | 43.0 | 3.05e-01 | 92.7% | 66.4% |
ECOD (62)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3957419 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.94 | 85.0 | 6.86e-01 | 100.0% | 54.7% |
| 5047797 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.93 | 86.0 | 6.87e-01 | 100.0% | 54.7% |
| 3352169 | 109.4.1.1296 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_long, TPR_24 | 0.93 | 85.0 | 5.15e-01 | 100.0% | 17.8% |
| 5005724 | 3755.3.1.637 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 | 0.92 | 82.0 | 4.97e-01 | 100.0% | 17.4% |
| 5018716 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.92 | 83.0 | 6.84e-01 | 100.0% | 64.3% |
| 4311810 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.91 | 82.0 | 6.61e-01 | 100.0% | 54.7% |
| 4023144 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.91 | 65.0 | 3.76e-01 | 75.6% | 9.7% |
| 4985462 | 192.2.1.89 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › DUF7121 | 0.91 | 80.0 | 4.87e-01 | 100.0% | 17.1% |
| 4957532 | 3755.3.1.637 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 | 0.90 | 81.0 | 5.57e-01 | 100.0% | 96.2% |
| 5020701 | 3755.3.1.637 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 | 0.90 | 78.0 | 4.78e-01 | 100.0% | 17.4% |
| 3240217 | 603.1.1.105 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF31021 | 0.89 | 80.0 | 5.98e-01 | 100.0% | 43.2% |
| 4677488 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.88 | 78.0 | 4.93e-01 | 100.0% | 21.6% |
| 3614039 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.88 | 59.0 | 3.23e-01 | 73.2% | 5.0% |
| 3990182 | 3922.1.1.226 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Fy-3 | 0.87 | 75.0 | 5.43e-01 | 100.0% | 35.7% |
| 3477926 | 3281.1.1.0 ↗ | alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related | 0.87 | 76.0 | 7.44e-01 | 100.0% | 88.9% |
| 4193561 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.87 | 75.0 | 7.33e-01 | 100.0% | 91.1% |
| 5074957 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.87 | 77.0 | 6.39e-01 | 100.0% | 60.0% |
| 3697996 | 7013.1.1.1 ↗ | alpha bundles › Ribosome assembly factor Efg1-like › Ribosome assembly factor Efg1-like › Ribosome assembly factor Efg1-like › Efg1 | 0.87 | 74.0 | 4.77e-01 | 100.0% | 21.6% |
| 3427404 | 3930.1.1.10 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › DUF5587 | 0.84 | 72.0 | 4.25e-01 | 95.1% | 15.9% |
| 4636643 | 148.1.3.209 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › GrpE | 0.84 | 76.0 | 5.60e-01 | 100.0% | 41.0% |
| 3857829 | 2485.1.1.17 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › OST3_OST6 | 0.83 | 72.0 | 5.26e-01 | 100.0% | 38.2% |
| 3832382 | 5069.1.3.60 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › OST3_OST6 | 0.83 | 71.0 | 5.12e-01 | 100.0% | 35.0% |
| 3555578 | 633.22.1.15 ↗ | alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) › OST3_OST6 | 0.83 | 71.0 | 5.24e-01 | 100.0% | 38.2% |
| 3796707 | 2485.1.1.17 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › OST3_OST6 | 0.83 | 72.0 | 4.28e-01 | 100.0% | 16.6% |
| 3618935 | 192.15.1.77 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › OST3_OST6 | 0.82 | 70.0 | 5.09e-01 | 100.0% | 36.5% |
| 3600361 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.81 | 68.0 | 5.30e-01 | 100.0% | 50.5% |
| 4009921 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.81 | 68.0 | 4.17e-01 | 100.0% | 16.2% |
| 4124331 | 192.15.1.76 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › CUPID | 0.80 | 65.0 | 4.94e-01 | 100.0% | 37.3% |
| 3835496 | 3791.1.1.1 ↗ | alpha arrays › EDS1-PAD4 (EP) domain › EDS1-PAD4 (EP) domain › EDS1-PAD4 (EP) domain › EDS1_EP | 0.80 | 68.0 | 4.19e-01 | 100.0% | 17.1% |
| 3184585 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.80 | 71.0 | 5.90e-01 | 100.0% | 70.0% |
| 3595683 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.78 | 65.0 | 4.27e-01 | 100.0% | 22.7% |
| 3590183 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.78 | 64.0 | 4.68e-01 | 100.0% | 33.3% |
| 3989542 | 2484.1.1.269 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_4 | 0.78 | 63.0 | 4.64e-01 | 97.6% | 35.2% |
| 3276975 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.77 | 65.0 | 4.55e-01 | 97.6% | 30.4% |
| 5010442 | 5060.2.1.0 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain | 0.77 | 66.0 | 4.40e-01 | 97.6% | 25.6% |
| 3389963 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.77 | 65.0 | 5.58e-01 | 100.0% | 58.6% |
| 3402099 | 5043.2.1.5 ↗ | extended segments › Sensor proteins transmembrane domains › NarQ transmembrane domain › NarQ transmembrane domain › ATP_synt_H | 0.76 | 64.0 | 5.36e-01 | 100.0% | 70.7% |
| 3494868 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.76 | 65.0 | 4.13e-01 | 100.0% | 20.0% |
| 3202976 | 7023.1.1.0 ↗ | alpha bundles › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein | 0.75 | 63.0 | 4.23e-01 | 100.0% | 24.1% |
| 4954273 | 109.4.1.192 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 | 0.75 | 65.0 | 4.07e-01 | 100.0% | 17.9% |
| 3284507 | 150.8.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE | 0.74 | 59.0 | 3.99e-01 | 100.0% | 31.4% |
| 3415356 | 5045.1.1.3 ↗ | alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › V_ATPase_I | 0.74 | 60.0 | 3.48e-01 | 100.0% | 12.0% |
| 3402853 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.73 | 61.0 | 5.82e-01 | 100.0% | 82.0% |
| 3449084 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.72 | 57.0 | 4.46e-01 | 100.0% | 39.0% |
| 4971641 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.71 | 59.0 | 4.56e-01 | 97.6% | 54.0% |
| 3505507 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.71 | 57.0 | 4.94e-01 | 97.6% | 57.1% |
| 3790478 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.71 | 62.0 | 3.75e-01 | 100.0% | 15.9% |
| 4567807 | 397.7.1.6 ↗ | few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › PF29718 | 0.71 | 59.0 | 5.11e-01 | 95.1% | 61.5% |
| 4436874 | 397.7.1.1 ↗ | few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › Vicilin_N | 0.71 | 59.0 | 5.81e-01 | 97.6% | 91.1% |
| 4512804 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.70 | 49.0 | 4.94e-01 | 78.0% | 82.5% |
| 3237950 | 3226.1.1.3 ↗ | alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › HCO3_cotransp | 0.70 | 60.0 | 3.36e-01 | 95.1% | 65.8% |
| 3592737 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.70 | 54.0 | 4.89e-01 | 97.6% | 63.1% |
| 3531403 | 3914.1.1.0 ↗ | alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain | 0.69 | 58.0 | 5.53e-01 | 100.0% | 82.0% |
| 4957559 | 283.2.1.2 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Phage_sheath_1C | 0.69 | 62.0 | 4.63e-01 | 100.0% | 42.0% |
| 3347379 | 3470.1.1.26 ↗ | extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › DUF543 | 0.69 | 58.0 | 5.02e-01 | 97.6% | 64.6% |
| 4277306 | 4974.1.1.0 ↗ | alpha bundles › CRISPR-Cas system first helical domain › CRISPR-Cas system first helical domain › CRISPR-Cas system RNase C2c2 first helical domain | 0.68 | 57.0 | 3.87e-01 | 97.6% | 26.2% |
| 5043620 | 3352.1.1.1 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3 | 0.68 | 53.0 | 3.02e-01 | 90.2% | 8.4% |
| 4346136 | 605.1.1.108 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › GrpE | 0.68 | 58.0 | 5.03e-01 | 97.6% | 63.1% |
| 2593949 | 3833.1.1.0 ↗ | alpha complex topology › TcA alpha-helical shell domain › TcA alpha-helical shell domain › TcA alpha-helical shell domain | 0.67 | 54.0 | 5.09e-01 | 97.6% | 72.5% |
| 3888162 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.65 | 49.0 | 3.81e-01 | 100.0% | 35.0% |
| 3242655 | 7023.1.1.0 ↗ | alpha bundles › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein | 0.64 | 54.0 | 4.15e-01 | 97.6% | 86.7% |
| 5057836 | 207.9.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide | 0.60 | 48.0 | 3.28e-01 | 100.0% | 38.3% |