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UBF19248.1

Arc-Vir

MZ334493__UBF19248.1__HRTV-17-gp49__00049

Identity

Accession:
MZ334493 ↗
Protein ID:
UBF19248.1 ↗
Kingdom:
archaea

Quality

92.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thumleimavirales› Hafunaviridae› Haloferacalesvirus› Halorubrum_phage_HRTV-17

TaxID: 2877997

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-63
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5hvqC01 3.90.1150.220 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.63 53.0 4.87e-01 93.4% 93.8%
1p4xA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 52.0 4.10e-01 93.4% 55.9%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.61 40.0 3.39e-01 100.0% 38.7%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 47.0 4.08e-01 91.8% 64.8%
1zarA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 48.0 4.29e-01 91.8% 73.0%
4k22B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 48.0 3.26e-01 100.0% 34.3%
3keyA02 3.30.1370.230 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain 0.56 42.0 3.84e-01 85.2% 89.8%
7eu1A02 1.10.132.30 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain 0.55 45.0 3.61e-01 95.1% 44.0%
3mseB00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.55 46.0 3.49e-01 100.0% 87.5%
5vt9B01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.55 45.0 4.35e-01 98.4% 84.9%
2im5A00 3.20.140.10 Alpha Beta › Alpha-Beta Barrel › nicotinate phosphoribosyltransferase › nicotinate phosphoribosyltransferase 0.55 40.0 2.49e-01 80.3% 48.1%
1nyrA03 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.55 40.0 2.62e-01 82.0% 24.1%
4up8A02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.54 45.0 2.78e-01 100.0% 86.7%
3uifA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.54 38.0 2.66e-01 98.4% 20.3%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 44.0 3.49e-01 98.4% 55.5%
6teyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 43.0 4.19e-01 96.7% 94.5%
3c0wA02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.53 44.0 3.81e-01 98.4% 76.7%
2jtvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 42.0 4.20e-01 98.4% 90.8%
1zc1A02 3.10.330.10 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.52 42.0 3.96e-01 96.7% 72.7%
1kyzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 42.0 3.71e-01 100.0% 76.7%
1bkcE00 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.52 41.0 2.80e-01 91.8% 27.0%
1wj5A01 1.10.10.980 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › CST, Suppressor of Cdc13 homolog, complex subunit STN1, N-terminal domain 0.51 40.0 3.55e-01 91.8% 90.8%
2e9hA01 3.30.30.170 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.51 41.0 3.54e-01 100.0% 78.8%
4etsA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 36.0 3.17e-01 73.8% 65.5%
2a5yC03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.39e-01 91.8% 55.9%
4g6zA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.50 36.0 2.37e-01 78.7% 43.8%
4b8cD02 3.30.1370.190 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.50 35.0 3.41e-01 85.2% 66.2%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3621527 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.73 52.0 4.72e-01 77.0% 57.5%
3381371 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 55.0 5.73e-01 86.9% 98.2%
3591468 3609.1.1.0 ↗ alpha arrays › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain 0.66 45.0 4.21e-01 75.4% 56.4%
3598643 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 50.0 4.85e-01 88.5% 94.3%
4094061 101.1.9.98 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF4004 0.63 46.0 4.18e-01 78.7% 70.6%
3783976 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.63 43.0 3.76e-01 100.0% 47.8%
3426143 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.61 49.0 4.07e-01 91.8% 67.0%
3402524 101.1.2.186 ↗ alpha arrays › HTH › HTH › winged helix domain › ASH2L-like_WH 0.60 50.0 4.41e-01 96.7% 95.8%
3790123 101.1.2.496 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_eIF2D 0.59 49.0 4.24e-01 98.4% 84.8%
None — 0.58 45.0 2.87e-01 90.2% 92.2%
3834810 4959.1.1.1 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.58 47.0 3.77e-01 95.1% 45.2%
1641048 4959.1.1.1 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.58 46.0 3.60e-01 95.1% 39.7%
5061951 66.1.1.4 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › FtrD-like 0.58 41.0 3.40e-01 77.0% 97.5%
4103595 314.1.1.9 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His 0.57 44.0 2.78e-01 83.6% 71.1%
3613364 108.1.1.27 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6 0.57 47.0 4.04e-01 96.7% 92.4%
4299924 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.57 41.0 2.62e-01 78.7% 23.1%
3670673 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.56 45.0 3.78e-01 91.8% 67.3%
3409703 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.56 37.0 2.87e-01 100.0% 31.5%
3667166 304.20.1.2 ↗ a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › Nrap_D3 0.56 46.0 3.54e-01 100.0% 69.7%
3985490 192.2.1.5 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › DUF4376 0.55 37.0 3.02e-01 100.0% 34.7%
4500953 314.1.1.9 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His 0.55 42.0 2.72e-01 83.6% 67.7%
3782967 304.20.1.2 ↗ a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › Nrap_D3 0.55 46.0 3.48e-01 100.0% 66.5%
4927248 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 44.0 4.25e-01 96.7% 78.4%
3204533 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.54 34.0 3.19e-01 98.4% 52.0%
5035744 2008.1.1.77 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NOV_C 0.54 47.0 3.75e-01 100.0% 94.4%
3826758 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.54 44.0 3.81e-01 93.4% 66.0%
3860366 4156.1.1.0 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like 0.54 36.0 2.90e-01 75.4% 31.4%
4940297 314.1.1.9 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His 0.53 40.0 2.56e-01 83.6% 70.4%
4978743 2003.1.7.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › CoA_trans 0.53 41.0 2.72e-01 88.5% 29.5%
5075417 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.53 41.0 3.63e-01 100.0% 76.5%
4449700 108.1.1.26 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5 0.52 43.0 3.60e-01 98.4% 95.0%
4296076 288.1.1.1 ↗ a+b four layers › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › Cu-oxidase_4 0.52 42.0 2.95e-01 100.0% 57.3%
4020114 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 44.0 2.75e-01 100.0% 15.8%
4023899 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.52 41.0 3.94e-01 93.4% 78.7%
4966126 3696.1.1.2 ↗ a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › XPB_DRD 0.52 37.0 3.59e-01 91.8% 67.1%
3396946 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.52 37.0 3.86e-01 77.0% 84.5%
3206396 4959.1.1.1 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.51 40.0 3.45e-01 93.4% 49.6%
3321176 5051.1.1.6 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans 0.51 39.0 2.48e-01 93.4% 59.3%
3305814 2002.1.1.174 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MR_MLE_C 0.51 36.0 2.47e-01 77.0% 56.0%
5075143 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.50 40.0 3.00e-01 100.0% 42.4%
4935614 3457.1.1.1 ↗ alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Peptidase_A24 0.50 43.0 3.09e-01 100.0% 49.5%
3439566 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.50 40.0 3.74e-01 95.1% 70.6%
3716727 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.50 38.0 2.33e-01 100.0% 12.7%
3643341 108.1.1.98 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 0.50 40.0 3.74e-01 95.1% 69.4%