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UBF22600.1

Arc-Vir

MZ334521__UBF22600.1__HRTV-25-gp19__00019

Identity

Accession:
MZ334521 ↗
Protein ID:
UBF22600.1 ↗
Kingdom:
archaea

Quality

81.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thumleimavirales› Hafunaviridae› Laminvirus› Halorubrum_tailed_virus_25

TaxID: 2878006

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-84
PDB
D2 high residues 159-256
PDB
Domain cluster: rep: IMGVR_UViG_2554235497_000003-2554235497-2556172808__D117-208
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 51.0 5.84e-01 89.8% 94.5%
1m4zA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.74 51.0 3.99e-01 71.4% 67.9%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.71 49.0 3.88e-01 71.4% 35.7%
2e6nA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 52.0 5.10e-01 96.9% 74.0%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 48.0 5.17e-01 96.9% 91.3%
5zr6A02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.63 45.0 5.09e-01 75.5% 100.0%
2dt4A00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.61 46.0 4.09e-01 80.6% 76.2%
1zyoA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 41.0 4.06e-01 95.9% 69.3%
1arbA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 46.0 4.30e-01 85.7% 92.6%
4me8A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.58 43.0 4.04e-01 77.6% 100.0%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.58 36.0 4.40e-01 74.5% 100.0%
6tdyD01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.57 41.0 4.59e-01 76.5% 98.7%
2hzrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 40.0 3.39e-01 72.4% 72.7%
1vloA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.56 34.0 3.56e-01 70.4% 63.7%
4eq8A00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.56 49.0 4.27e-01 100.0% 63.9%
1kpsC00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.56 38.0 3.32e-01 70.4% 65.4%
3b79A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 49.0 4.55e-01 100.0% 96.0%
2ol5A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 37.0 3.08e-01 70.4% 94.5%
2qqpA03 2.60.40.4260 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 40.0 3.66e-01 78.6% 73.0%
1lkeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 40.0 3.43e-01 76.5% 66.9%
1qwdB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 39.0 3.33e-01 74.5% 78.3%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.55 47.0 3.90e-01 99.0% 92.0%
1qexA03 2.60.40.1680 Mainly Beta › Sandwich › Immunoglobulin-like › 4-oxalocrotonate tautomerase-like 0.55 41.0 3.93e-01 80.6% 98.2%
4irzA01 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.54 43.0 2.81e-01 84.7% 24.2%
5w17A01 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.53 43.0 3.80e-01 89.8% 97.3%
2htdB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 39.0 3.67e-01 79.6% 65.3%
1bnkA00 3.10.300.10 Alpha Beta › Roll › 3-methyladenine DNA Glycosylase; Chain A › Methylpurine-DNA glycosylase (MPG) 0.52 42.0 3.44e-01 90.8% 79.5%
1gkaB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 42.0 3.53e-01 90.8% 83.3%
4fgoA00 3.10.620.30 Alpha Beta › Roll › C8orf32 fold › 0.51 47.0 3.81e-01 100.0% 61.9%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3597690 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 52.0 6.00e-01 74.5% 97.1%
3515495 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 53.0 5.42e-01 96.9% 77.9%
3936496 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 57.0 5.69e-01 96.9% 81.0%
3501699 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 50.0 5.51e-01 95.9% 88.7%
3570700 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.71 53.0 5.06e-01 96.9% 67.0%
3564972 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 45.0 5.24e-01 71.4% 90.0%
3230520 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.70 52.0 5.46e-01 95.9% 84.4%
3798312 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.70 49.0 5.61e-01 78.6% 100.0%
4929875 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.70 52.0 5.24e-01 96.9% 77.0%
3597002 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 48.0 4.63e-01 71.4% 67.3%
3935716 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.69 50.0 5.62e-01 82.7% 98.7%
3725153 4.1.1.286 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7072 0.69 47.0 5.17e-01 70.4% 90.0%
3627914 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.69 53.0 5.30e-01 95.9% 80.0%
3226827 4.1.1.133 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_YG-box 0.67 45.0 4.40e-01 73.5% 62.9%
4376886 4.1.1.241 ↗ beta barrels › SH3 › SH3 › SH3 › NifZ 0.67 46.0 5.04e-01 70.4% 98.8%
3449268 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 49.0 5.27e-01 78.6% 100.0%
3926120 4.1.1.169 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4819 0.65 59.0 5.18e-01 100.0% 84.8%
3488114 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 46.0 4.26e-01 71.4% 58.3%
4994895 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.64 48.0 5.21e-01 78.6% 100.0%
3959531 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 44.0 5.01e-01 89.8% 100.0%
5020252 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.64 55.0 5.16e-01 95.9% 90.8%
3991896 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 43.0 4.38e-01 70.4% 84.2%
3342793 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.62 56.0 4.54e-01 100.0% 78.4%
3280223 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.61 46.0 3.60e-01 77.6% 46.2%
3224512 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 46.0 4.52e-01 79.6% 91.3%
3549321 4.11.1.5 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24, PF31032 0.61 52.0 4.45e-01 96.9% 58.1%
3408358 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.61 43.0 3.10e-01 74.5% 92.9%
3665882 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.60 54.0 4.90e-01 100.0% 91.9%
3677761 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.60 45.0 4.22e-01 80.6% 84.0%
4015835 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.59 53.0 4.65e-01 99.0% 81.4%
3246847 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.58 43.0 3.43e-01 78.6% 85.1%
4636885 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.58 41.0 4.64e-01 75.5% 100.0%
3854230 269.1.1.1 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.57 45.0 3.21e-01 87.8% 52.9%
3484999 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.53 39.0 3.40e-01 76.5% 69.8%
3284911 1.1.5.15 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › F420H2_quin_red 0.53 42.0 3.66e-01 84.7% 92.0%
3291118 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.53 43.0 3.75e-01 88.8% 94.7%
853 9.1.1.23 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF3598_N 0.52 35.0 3.24e-01 70.4% 93.2%
5038503 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.50 40.0 3.68e-01 88.8% 97.8%
D3 high residues 288-385
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4l7aA00 3.40.390.70 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › 0.68 61.0 4.50e-01 100.0% 38.3%
3hbvP01 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.67 61.0 5.43e-01 100.0% 76.1%
3e11A00 3.30.2010.20 Alpha Beta › 2-Layer Sandwich › Zincin-like › 0.66 57.0 5.48e-01 95.9% 85.1%
3wgtA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.65 57.0 4.54e-01 98.0% 96.5%
1j7nA01 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.62 55.0 4.24e-01 99.0% 50.9%
2h1jA00 1.10.1370.30 Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › 0.61 54.0 3.37e-01 100.0% 53.6%
2g8lB01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.61 40.0 4.56e-01 96.9% 97.0%
1k9fA01 3.30.379.10 Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › Chitobiase/beta-hexosaminidase domain 2-like 0.56 48.0 4.50e-01 98.0% 84.8%
7bobA02 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.55 45.0 3.70e-01 92.9% 90.5%
6ajpA00 3.40.470.10 Alpha Beta › 3-Layer(aba) Sandwich › Uracil-DNA Glycosylase, subunit E › Uracil-DNA glycosylase-like domain 0.52 45.0 3.63e-01 98.0% 76.2%
5di3B00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 45.0 3.62e-01 99.0% 79.4%
5efrA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.51 27.0 3.04e-01 93.9% 64.4%
1f6bB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 44.0 3.68e-01 98.0% 88.3%
2ynmC02 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.51 42.0 3.78e-01 92.9% 99.3%
5ar1A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 43.0 3.45e-01 99.0% 88.4%
3l84A03 3.40.50.920 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 42.0 3.98e-01 92.9% 85.6%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3652295 2498.1.1.39 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.71 60.0 5.34e-01 98.0% 64.3%
5058128 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.71 61.0 4.92e-01 99.0% 48.9%
3730727 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.69 61.0 4.38e-01 99.0% 70.7%
4011118 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.67 61.0 4.38e-01 100.0% 41.5%
4950270 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.65 58.0 4.66e-01 100.0% 57.9%
3693426 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.64 57.0 4.44e-01 99.0% 66.8%
3200271 2007.2.2.8 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphotyrosine protein phosphatases I-like › PIG-S 0.63 55.0 4.70e-01 99.0% 73.3%
3250181 4334.1.1.0 ↗ beta complex topology › Inserted beta sandwich domain in Dac-like proteins › Inserted beta sandwich domain in Dac-like proteins › Inserted beta sandwich domain in Dac-like proteins 0.63 42.0 4.61e-01 96.9% 85.0%
3389627 2498.1.1.3 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M2 0.63 57.0 3.49e-01 100.0% 56.6%
3686613 261.1.1.0 ↗ a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain 0.62 54.0 4.72e-01 98.0% 76.0%
4588088 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.61 53.0 4.08e-01 96.9% 95.2%
4278662 2498.4.1.0 ↗ mixed a+b and a/b › Zincin-like › HSP90 C-terminal domain (C-terminal part of Pfam 00183) › HSP90 C-terminal domain (C-terminal part of Pfam 00183) 0.61 53.0 5.04e-01 99.0% 82.5%
3184465 261.1.1.0 ↗ a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain 0.60 53.0 4.54e-01 99.0% 75.6%
3776354 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.59 50.0 3.74e-01 93.9% 92.8%
4955694 2498.2.1.0 ↗ mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain 0.59 52.0 4.84e-01 99.0% 93.6%
3595377 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 50.0 3.66e-01 98.0% 76.3%
5043167 2498.2.1.0 ↗ mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain 0.58 50.0 4.66e-01 98.0% 90.4%
4935744 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.57 44.0 4.34e-01 94.9% 78.1%
3973583 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 36.0 2.14e-01 87.8% 7.3%
3739448 7569.1.1.1 ↗ a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG 0.54 48.0 3.89e-01 100.0% 83.6%
5045709 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 47.0 4.10e-01 99.0% 92.9%
4521212 2498.2.1.8 ↗ mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain › PF29164 0.53 43.0 3.85e-01 92.9% 75.3%
3935348 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 46.0 3.68e-01 100.0% 78.8%
D4 high residues 392-577
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lyiA01 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.53 33.0 3.68e-01 84.4% 76.4%
1jmwA00 1.20.120.30 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain 0.52 33.0 3.63e-01 93.0% 78.1%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5000698 604.38.1.0 ↗ alpha bundles › Spectrin repeat-like › Legionella effector SdeA 3-helical bundle › Legionella effector SdeA 3-helical bundle 0.60 27.0 3.59e-01 85.5% 76.2%
4372580 613.1.1.1 ↗ alpha complex topology › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › tRNA-synt_2c 0.53 34.0 3.40e-01 84.4% 60.5%