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UBF22615.1

Arc-Vir

MZ334521__UBF22615.1__HRTV-25-gp34__00034

Identity

Accession:: MZ334521 ↗
Protein ID:: UBF22615.1 ↗
Kingdom:: archaea

Quality

73.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thumleimavirales› Hafunaviridae› Laminvirus› Halorubrum_tailed_virus_25

TaxID: 2878006

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 30-98

PDB

Domain cluster: rep: SRR1747030_scaffold_3_prodigal-single.1__X__X__00209__D1-71

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2ia1A01	3.30.500.20	Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › BH3703-like domains	0.73	35.0	2.84e-01	82.6%	26.9%
1ob8A00	3.40.1350.10	Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 ›	0.68	47.0	3.96e-01	72.5%	72.3%
3rm5B01	3.40.1190.20	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase	0.62	48.0	3.23e-01	87.0%	45.8%
6p8uA01	3.30.460.10	Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2	0.57	41.0	3.27e-01	76.8%	91.0%
2qe8A00	2.120.10.30	Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain	0.57	44.0	2.81e-01	82.6%	53.1%
3hrpA02	2.120.10.30	Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain	0.56	43.0	2.83e-01	82.6%	49.7%
2im9A02	2.30.260.10	Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain	0.56	38.0	3.04e-01	71.0%	69.4%
1wquA00	3.30.505.10	Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain	0.56	43.0	3.66e-01	84.1%	56.1%
4j6oA00	3.60.21.10	Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases	0.56	41.0	2.80e-01	79.7%	30.7%
1x2jA00	2.120.10.80	Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller	0.54	40.0	2.70e-01	79.7%	61.0%
3r4rA02	2.60.40.2590	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.52	35.0	2.96e-01	71.0%	51.2%
6jwfA01	2.120.10.30	Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain	0.51	38.0	2.39e-01	81.2%	48.2%
5ov3B01	2.130.10.10	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase	0.51	41.0	2.73e-01	91.3%	54.1%

ECOD (23)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3777158	11.1.1.1 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin	0.81	44.0	2.68e-01	75.4%	9.9%
3404254	2007.1.2.0 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I	0.73	56.0	4.29e-01	81.2%	58.7%
3501098	4126.1.1.1 ↗	a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › Pro_CA	0.72	54.0	3.60e-01	79.7%	60.8%
2495545	207.2.1.22 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix	0.70	63.0	3.80e-01	100.0%	51.2%
3989854	3761.1.1.4 ↗	beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › CFSR	0.68	50.0	4.61e-01	76.8%	88.2%
3989853	77.1.1.13 ↗	beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › CFSR	0.67	50.0	3.18e-01	78.3%	36.2%
4928895	79.1.1.0 ↗	beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain	0.65	52.0	3.51e-01	88.4%	33.2%
3678544	207.1.1.103 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_R13L1-DRL21	0.64	55.0	3.51e-01	100.0%	57.4%
4933213	375.1.1.31 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1	0.61	37.0	3.70e-01	89.9%	58.6%
3477642	214.1.1.1 ↗	a+b two layers › SH2 › SH2 › SH2 › SH2	0.61	46.0	3.90e-01	82.6%	49.2%
3431771	219.1.1.16 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48	0.61	41.0	3.17e-01	71.0%	43.0%
4948153	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.60	41.0	4.15e-01	97.1%	71.4%
3890372	214.1.1.1 ↗	a+b two layers › SH2 › SH2 › SH2 › SH2	0.60	43.0	3.72e-01	76.8%	58.2%
4597935	286.1.1.0 ↗	a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like	0.59	42.0	3.31e-01	75.4%	61.3%
5080826	2008.1.1.0 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like	0.58	40.0	3.18e-01	72.5%	60.7%
3957008	5.1.3.7 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › NHL	0.58	39.0	3.00e-01	71.0%	68.2%
3932894	2492.1.1.36 ↗	a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › ODR4-like	0.57	40.0	3.23e-01	75.4%	54.7%
4939442	5.1.4.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed	0.57	42.0	2.76e-01	79.7%	53.5%
3368126	5.1.5.37 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF295	0.57	45.0	3.11e-01	88.4%	79.2%
3271043	286.1.1.1 ↗	a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase	0.53	38.0	2.90e-01	79.7%	77.4%
4953503	2008.1.1.107 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD	0.52	47.0	3.35e-01	100.0%	69.0%
1290001	5.1.3.15 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Glu_cyclase_2	0.52	37.0	2.65e-01	76.8%	49.1%
3178511	2003.1.4.1 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain › TPP_enzyme_M	0.50	36.0	2.77e-01	78.3%	40.6%

D2 medium residues 280-344

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3f1yA00	3.90.550.10	Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	0.59	35.0	2.28e-01	87.7%	11.9%
5h7kA01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.54	36.0	2.41e-01	76.9%	18.6%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4856500	135.1.1.1 ↗	alpha arrays › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › G-alpha	0.60	29.0	3.60e-01	72.3%	73.5%
4002619	11.1.1.97 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set	0.56	31.0	2.84e-01	84.6%	37.6%
3496898	7579.1.1.42 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4	0.53	28.0	1.84e-01	75.4%	9.8%
3890507	2004.1.1.156 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5	0.52	37.0	2.60e-01	76.9%	83.9%