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UBF22623.1

Arc-Vir

MZ334521__UBF22623.1__HRTV-25-gp42__00042

Identity

Accession:
MZ334521 ↗
Protein ID:
UBF22623.1 ↗
Kingdom:
archaea

Quality

82.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thumleimavirales› Hafunaviridae› Laminvirus› Halorubrum_tailed_virus_25

TaxID: 2878006

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-35
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF28087.1 best HVO_2523 52.7 4.40e-14 91.4% 93.9%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3m7nA03 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.77 56.0 5.65e-01 80.0% 82.4%
2aklA01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.70 56.0 5.30e-01 94.3% 83.7%
2jneA00 2.10.290.10 Mainly Beta › Ribbon › Rubredoxin-like › YfgJ-like 0.68 49.0 4.10e-01 82.9% 47.9%
2riqA02 2.20.25.630 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.68 50.0 4.35e-01 85.7% 61.7%
5w5yB08 3.90.1800.10 Alpha Beta › Alpha-Beta Complex › DCoH-like › RNA polymerase alpha subunit dimerisation domain 0.66 48.0 3.24e-01 80.0% 44.4%
3u50C02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.66 46.0 4.67e-01 80.0% 85.7%
1p91B00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.66 51.0 3.13e-01 94.3% 43.4%
5agaA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 43.0 2.67e-01 88.6% 10.8%
2ktsA01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.62 45.0 3.42e-01 88.6% 73.5%
1m2vB03 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.59 42.0 3.65e-01 80.0% 56.5%
3gb0A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.58 44.0 2.74e-01 97.1% 91.2%
2dryA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 44.0 3.19e-01 100.0% 73.8%
3k1tA02 3.40.50.11280 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glutamate-cysteine ligase, N-terminal domain 0.56 47.0 3.22e-01 100.0% 69.1%
2pziB02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 43.0 2.98e-01 94.3% 81.4%
5k6uA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.04e-01 85.7% 75.6%
3pamB00 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.52 40.0 2.52e-01 94.3% 51.6%
6aikB00 3.40.50.10300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like 0.50 34.0 2.18e-01 100.0% 80.2%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4996042 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.93 65.0 4.10e-01 74.3% 16.8%
4963355 375.1.1.355 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF28087 0.90 69.0 7.27e-01 82.9% 96.7%
5074494 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.88 62.0 3.99e-01 74.3% 17.9%
5047683 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.86 63.0 3.98e-01 80.0% 17.1%
5058144 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.86 60.0 3.89e-01 74.3% 18.6%
5076490 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.85 63.0 3.97e-01 80.0% 17.5%
4948171 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.84 62.0 3.98e-01 80.0% 19.3%
4978231 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.83 64.0 4.32e-01 85.7% 45.6%
5078764 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.83 58.0 3.93e-01 74.3% 21.7%
3603239 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.83 64.0 4.08e-01 80.0% 18.7%
4993944 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.83 63.0 4.07e-01 82.9% 20.0%
5025169 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.83 63.0 4.19e-01 85.7% 41.5%
5036890 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.82 62.0 4.25e-01 85.7% 45.6%
4945757 375.1.1.7 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.82 62.0 6.49e-01 82.9% 96.7%
5008323 2.1.1.51 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EXOSC1 0.82 62.0 4.19e-01 85.7% 41.9%
5016164 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.81 59.0 3.86e-01 80.0% 19.3%
3829075 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.81 59.0 3.78e-01 80.0% 18.1%
4940391 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.81 61.0 4.15e-01 85.7% 45.6%
4962086 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.81 61.0 5.84e-01 82.9% 72.5%
4990538 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.80 61.0 4.18e-01 85.7% 46.3%
4967975 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.80 60.0 4.09e-01 85.7% 43.1%
5015586 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.80 60.0 5.38e-01 82.9% 58.0%
4943324 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.80 57.0 5.48e-01 77.1% 67.5%
4934076 375.1.1.85 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Auto_anti-p27 0.80 56.0 5.47e-01 77.1% 70.0%
5062738 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.79 60.0 6.26e-01 82.9% 96.7%
4961808 375.1.1.37 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.79 59.0 5.78e-01 85.7% 77.5%
5020293 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.79 58.0 5.40e-01 80.0% 62.2%
5057111 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.79 57.0 3.76e-01 80.0% 19.3%
3654792 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.78 56.0 5.82e-01 77.1% 90.0%
3674755 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.78 59.0 3.70e-01 85.7% 16.8%
4429397 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.78 55.0 3.53e-01 77.1% 15.9%
4987517 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.78 58.0 3.98e-01 85.7% 44.2%
5050463 4294.1.1.0 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.78 60.0 5.10e-01 88.6% 56.7%
5053348 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.77 58.0 6.05e-01 82.9% 96.7%
5066014 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.77 58.0 3.87e-01 85.7% 21.4%
4933052 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.76 57.0 5.54e-01 88.6% 75.0%
4929508 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 56.0 3.93e-01 88.6% 46.4%
4989659 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.75 58.0 3.96e-01 88.6% 26.2%
4943988 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.75 54.0 5.42e-01 80.0% 80.0%
5013019 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.75 62.0 5.59e-01 97.1% 76.0%
3260584 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.75 52.0 4.92e-01 77.1% 60.0%
4982959 3922.1.1.357 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Auto_anti-p27 0.75 63.0 4.44e-01 94.3% 98.0%
3947313 375.2.1.0 ↗ few secondary structure elements › Rubredoxin-like › YfgJ-like › YfgJ-like 0.72 54.0 5.59e-01 80.0% 96.7%
5047258 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 54.0 5.44e-01 88.6% 88.6%
3865962 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.71 52.0 3.29e-01 80.0% 15.1%
4945330 4294.1.1.11 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › ResIII 0.71 54.0 4.42e-01 88.6% 57.1%
3329411 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 48.0 4.47e-01 77.1% 54.0%
5013223 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.68 56.0 3.55e-01 100.0% 36.6%
4996238 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.68 51.0 3.32e-01 85.7% 19.4%
5025801 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.66 48.0 3.13e-01 85.7% 18.4%
5023627 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.65 52.0 3.27e-01 100.0% 30.7%
8055 375.2.1.0 ↗ few secondary structure elements › Rubredoxin-like › YfgJ-like › YfgJ-like 0.64 45.0 4.58e-01 82.9% 96.8%
5011867 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.61 44.0 3.00e-01 88.6% 21.4%
4928885 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 43.0 4.19e-01 82.9% 66.7%
5048038 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 41.0 3.66e-01 80.0% 63.3%
3330286 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.54 38.0 3.63e-01 74.3% 72.5%
4957592 375.1.1.327 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DZR 0.52 35.0 3.15e-01 74.3% 40.0%