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UBF23232.1

Arc-Vir

MZ334525__UBF23232.1__HATV-2-gp81__00081

Identity

Accession:
MZ334525 ↗
Protein ID:
UBF23232.1 ↗
Kingdom:
archaea

Quality

81.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thumleimavirales› Soleiviridae› Eilatmyovirus› Haloarcula_tailed_virus_2

TaxID: 2877989

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-65
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ffjA04 2.60.40.4040 Mainly Beta › Sandwich › Immunoglobulin-like › 0.71 52.0 3.91e-01 100.0% 30.7%
3mgjA00 3.30.70.2690 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › LOR/SDH bifunctional enzyme, conserved domain 0.71 60.0 4.87e-01 100.0% 91.7%
1yudA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.67 54.0 3.79e-01 100.0% 28.4%
4lvnP00 3.30.70.2380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 52.0 4.55e-01 93.8% 92.6%
5t17A00 3.30.1340.10 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like 0.62 43.0 3.66e-01 75.0% 98.8%
2vfrA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.61 47.0 3.57e-01 100.0% 33.1%
2yn5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 50.0 4.23e-01 97.9% 55.7%
8f4rA02 3.30.70.1430 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.60 48.0 4.00e-01 95.8% 100.0%
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 51.0 4.61e-01 100.0% 80.9%
6womA02 3.30.1360.30 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › GAD-like domain 0.59 43.0 3.17e-01 81.2% 59.3%
1qr4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 48.0 3.99e-01 100.0% 50.6%
2hw4A01 3.50.20.20 Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Janus/Ocnus 0.58 46.0 3.77e-01 100.0% 44.5%
2o2zA00 3.40.50.10680 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CofD-like domains 0.57 43.0 2.65e-01 85.4% 62.3%
1r5tA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.57 48.0 3.55e-01 100.0% 39.0%
2bvfA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.57 45.0 3.33e-01 100.0% 31.2%
1e0yA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.56 46.0 3.65e-01 97.9% 46.8%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 48.0 4.58e-01 100.0% 98.3%
6gh3A01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.56 40.0 2.50e-01 81.2% 93.8%
3w42A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.55 43.0 3.05e-01 100.0% 28.1%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.55 48.0 3.62e-01 100.0% 47.5%
3fw8A02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.55 43.0 2.90e-01 100.0% 20.9%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 46.0 3.98e-01 97.9% 90.0%
1jx4A04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.54 45.0 3.71e-01 100.0% 57.1%
6j0qA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.54 45.0 3.59e-01 100.0% 54.1%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 44.0 3.66e-01 100.0% 71.4%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 45.0 3.61e-01 100.0% 60.6%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 43.0 3.55e-01 95.8% 52.1%
2epkX01 3.30.160.230 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › N-acetyl-beta-d-glucosaminidase 0.52 38.0 3.37e-01 83.3% 83.7%
2iciA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 43.0 3.10e-01 95.8% 75.8%
1wmhA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 40.0 3.48e-01 91.7% 68.7%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.50 43.0 3.52e-01 100.0% 74.0%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3412052 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.68 50.0 4.73e-01 100.0% 65.0%
1291966 304.7.1.5 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › SUB1_ProdP9 0.66 52.0 4.55e-01 93.8% 92.6%
4426192 2004.1.1.36 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N 0.63 51.0 3.15e-01 97.9% 14.8%
3403068 11.1.1.798 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TPPC8_1st 0.62 53.0 3.59e-01 100.0% 37.9%
4977860 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.62 48.0 2.88e-01 89.6% 42.0%
5002193 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.62 49.0 3.86e-01 100.0% 40.0%
3978661 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.62 48.0 4.00e-01 100.0% 46.7%
3838472 2004.1.1.36 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N 0.60 48.0 3.09e-01 93.8% 28.5%
4304758 2010.1.1.1 ↗ a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV 0.60 48.0 3.48e-01 93.8% 59.4%
4046337 329.1.1.1 ↗ a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › GAD 0.60 43.0 3.22e-01 79.2% 39.2%
None — 0.60 50.0 2.98e-01 100.0% 15.6%
3911204 382.1.1.16 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › CD59 0.57 48.0 4.18e-01 100.0% 61.3%
3587074 1.1.13.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_N 0.57 49.0 3.77e-01 97.9% 65.5%
4981838 217.1.1.2 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 0.56 44.0 3.01e-01 100.0% 22.4%
5005349 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 46.0 2.74e-01 100.0% 12.2%
3581513 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.54 44.0 3.85e-01 97.9% 86.3%
4883814 4045.1.1.1 ↗ a+b two layers › barrel domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › barrel domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › barrel domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › Aminotran_4 0.54 45.0 3.50e-01 100.0% 53.9%
4332626 3532.1.1.0 ↗ alpha arrays › RNA-binding domain of telomerase › RNA-binding domain of telomerase › RNA-binding domain of telomerase 0.54 43.0 2.48e-01 100.0% 10.6%
4029119 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 43.0 2.68e-01 100.0% 13.7%
3562400 221.1.1.89 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Il2rg 0.52 41.0 3.28e-01 95.8% 60.0%
163858 221.1.1.17 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Stap_Strp_tox_C 0.52 43.0 3.19e-01 95.8% 85.0%