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UBF23268.1

Arc-Vir

MZ334525__UBF23268.1__HATV-2-gp117__00117

Identity

Accession:
MZ334525 ↗
Protein ID:
UBF23268.1 ↗
Kingdom:
archaea

Quality

95.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-86
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fiwA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.76 69.0 5.56e-01 100.0% 71.9%
3iwgA01 3.40.630.80 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › 0.73 65.0 5.67e-01 98.8% 73.8%
4my0A02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.72 65.0 5.50e-01 100.0% 70.7%
4iusA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.71 63.0 4.51e-01 100.0% 40.9%
1tfkA00 3.10.450.200 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.70 37.0 3.65e-01 75.6% 46.8%
3r90A00 3.10.400.20 Alpha Beta › Roll › Sulfate adenylyltransferase › 0.62 53.0 4.15e-01 95.3% 95.1%
5yrzB00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.58 32.0 3.80e-01 88.4% 79.3%
7qs0A01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.58 41.0 3.30e-01 74.4% 56.6%
6obtA00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.58 41.0 2.91e-01 74.4% 30.6%
4qt6A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.56 40.0 3.35e-01 75.6% 61.0%
4z9mB02 3.30.590.10 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › Glutamine synthetase/guanido kinase, catalytic domain 0.56 48.0 3.78e-01 100.0% 58.1%
5nslA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.55 39.0 3.03e-01 73.3% 53.1%
4tpsA00 3.30.310.250 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Sporulation inhibitor of replication protein SirA 0.55 37.0 3.19e-01 100.0% 42.9%
2ogqA01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.54 41.0 3.66e-01 95.3% 56.3%
7r5yA01 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.50 40.0 2.71e-01 91.9% 82.7%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5056326 213.1.1.31 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_10 0.75 67.0 5.58e-01 100.0% 76.0%
3284114 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.74 68.0 5.63e-01 100.0% 59.3%
4930465 4294.1.1.0 few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.69 35.0 4.11e-01 74.4% 68.3%
3474880 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.64 51.0 5.05e-01 97.7% 84.4%
3407402 331.1.1.1 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.63 44.0 4.26e-01 72.1% 85.3%
3379168 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.61 33.0 3.78e-01 76.7% 69.8%
3785266 243.6.1.4 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.61 47.0 4.59e-01 83.7% 81.1%
4934114 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.59 45.0 4.77e-01 84.9% 93.3%
4936918 244.2.1.1 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Pyr_redox_dim 0.58 41.0 3.66e-01 73.3% 86.2%
4216985 331.19.1.2 a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains › RnlA_toxin_N 0.58 40.0 4.07e-01 95.3% 72.9%
5000835 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.58 39.0 3.93e-01 94.2% 69.4%
1677788 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.58 42.0 4.26e-01 96.5% 76.1%
3490378 331.4.1.9 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C 0.57 38.0 3.98e-01 96.5% 73.8%
3175626 331.1.1.13 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › CPSF73-100_C 0.57 40.0 4.28e-01 97.7% 85.3%
4237612 3006.1.1.6 a+b two layers › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › CPSF73-100_C 0.57 42.0 4.26e-01 97.7% 78.8%
3171576 247.1.1.38 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C 0.57 41.0 4.24e-01 96.5% 81.2%
3599562 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.56 36.0 3.65e-01 93.0% 64.7%
3284638 4205.1.1.3 a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like › SMI1_KNR4 0.56 46.0 3.89e-01 94.2% 53.8%
4928736 331.19.1.0 a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains 0.55 43.0 3.69e-01 100.0% 52.1%
3474715 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 25.0 2.79e-01 95.3% 49.2%
3403199 331.1.1.1 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.54 43.0 3.99e-01 97.7% 68.2%
3273142 77.1.1.0 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.53 30.0 2.09e-01 96.5% 14.8%
None 0.53 45.0 2.94e-01 96.5% 46.1%
3597793 5094.1.1.0 a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like 0.53 31.0 2.64e-01 94.2% 35.6%
5007358 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.52 42.0 3.71e-01 100.0% 59.7%
3753962 5.1.3.7 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › NHL 0.51 41.0 2.83e-01 91.9% 56.7%
D2 medium residues 87-136
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2i79D00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.73 58.0 3.98e-01 100.0% 25.7%
4p78C00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.71 47.0 4.29e-01 96.0% 51.5%
4jxqA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.70 59.0 3.98e-01 100.0% 25.5%
3g2mA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 51.0 3.58e-01 98.0% 27.3%
5eovA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 54.0 3.61e-01 100.0% 34.1%
1ucnA00 3.30.70.141 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleoside diphosphate kinase-like domain 0.63 52.0 3.83e-01 100.0% 92.7%
3bh7B02 3.30.70.141 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleoside diphosphate kinase-like domain 0.63 51.0 4.01e-01 98.0% 57.0%
1qzzA03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.62 53.0 3.70e-01 100.0% 29.0%
2cz4A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 51.0 4.20e-01 100.0% 91.9%
3l8dA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 52.0 3.50e-01 100.0% 41.1%
2vi7A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 45.0 3.29e-01 100.0% 28.2%
3wa2X01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 45.0 3.88e-01 94.0% 52.9%
5aj3F00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.57 47.0 3.67e-01 98.0% 53.7%
1g60B00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 47.0 3.16e-01 100.0% 22.8%
3a27A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 46.0 3.14e-01 98.0% 26.5%
4hvcB03 3.30.110.30 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › C-terminal domain of ProRS 0.57 48.0 4.22e-01 98.0% 74.0%
2ma4A00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.57 45.0 4.12e-01 100.0% 89.7%
3ngqA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.57 49.0 2.99e-01 100.0% 16.1%
1cqmA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.56 45.0 3.79e-01 98.0% 64.3%
2f8lA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 45.0 2.99e-01 100.0% 22.0%
2qmwA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 44.0 3.91e-01 96.0% 64.9%
3lf7A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 40.0 2.43e-01 86.0% 10.4%
4q5tA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.54 41.0 3.12e-01 98.0% 31.3%
3vbhC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 36.0 2.37e-01 72.0% 51.2%
4dmgA03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 42.0 2.91e-01 100.0% 29.4%
3luyA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.51 41.0 3.57e-01 98.0% 56.2%
3u1dB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 35.0 2.71e-01 76.0% 72.7%
2b78A03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 40.0 2.82e-01 98.0% 27.4%
5xyiU00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.51 43.0 3.58e-01 100.0% 70.1%
1xdzA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 39.0 2.62e-01 90.0% 38.2%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4012023 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.67 56.0 3.60e-01 100.0% 22.8%
4060880 2003.1.5.73 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.64 52.0 3.43e-01 100.0% 24.0%
5008701 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.63 54.0 3.51e-01 100.0% 25.7%
4405891 2003.1.5.73 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.62 50.0 3.34e-01 100.0% 24.1%
4518940 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.62 53.0 3.53e-01 94.0% 26.3%
5073350 2003.1.5.79 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 0.61 51.0 3.54e-01 100.0% 43.7%
4995701 2003.1.5.12 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase 0.61 50.0 3.30e-01 100.0% 20.6%
3597137 2006.1.1.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF 0.61 51.0 3.14e-01 100.0% 58.8%
5031729 2003.1.5.12 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase 0.60 49.0 3.18e-01 100.0% 18.6%
4027962 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.60 48.0 4.08e-01 98.0% 56.8%
1388524 243.17.1.1 a+b two layers › Cystatin-like › C-terminal domain of PatG › C-terminal domain of PatG › PatG_C 0.60 49.0 3.63e-01 94.0% 35.4%
3840077 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 48.0 3.62e-01 96.0% 47.4%
3291436 304.113.1.1 a+b two layers › Alpha-beta plaits › Alpha subunit of glutamate synthase, insertion domain › Alpha subunit of glutamate synthase, insertion domain › GATase_2 0.59 49.0 3.79e-01 100.0% 52.8%
5039763 2003.1.5.12 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase 0.57 48.0 3.02e-01 100.0% 18.9%
4382087 2003.1.5.96 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MetW 0.56 46.0 3.09e-01 96.0% 43.9%
3483013 304.24.1.1 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.56 47.0 3.66e-01 100.0% 73.3%
3480319 304.113.1.1 a+b two layers › Alpha-beta plaits › Alpha subunit of glutamate synthase, insertion domain › Alpha subunit of glutamate synthase, insertion domain › GATase_2 0.56 46.0 3.71e-01 100.0% 58.2%
3592353 304.34.1.0 a+b two layers › Alpha-beta plaits › Nucleoside diphosphate kinases › Nucleoside diphosphate kinases 0.56 47.0 3.82e-01 100.0% 49.0%
3479781 304.113.1.0 a+b two layers › Alpha-beta plaits › Alpha subunit of glutamate synthase, insertion domain › Alpha subunit of glutamate synthase, insertion domain 0.55 46.0 3.69e-01 100.0% 58.2%
4585125 304.12.1.1 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.55 44.0 3.70e-01 98.0% 63.0%
3675944 310.3.1.20 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › GATase_2 0.55 45.0 4.12e-01 98.0% 82.9%
4259017 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.55 37.0 2.43e-01 72.0% 43.8%
3387627 304.113.1.1 a+b two layers › Alpha-beta plaits › Alpha subunit of glutamate synthase, insertion domain › Alpha subunit of glutamate synthase, insertion domain › GATase_2 0.54 44.0 3.92e-01 100.0% 80.0%
3326540 304.113.1.1 a+b two layers › Alpha-beta plaits › Alpha subunit of glutamate synthase, insertion domain › Alpha subunit of glutamate synthase, insertion domain › GATase_2 0.54 44.0 3.54e-01 100.0% 54.8%
3516801 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 44.0 2.72e-01 100.0% 36.9%
3697539 2003.1.5.71 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_33 0.52 41.0 2.58e-01 96.0% 40.9%
5040360 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 42.0 3.49e-01 94.0% 56.8%
3700686 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.52 42.0 3.02e-01 100.0% 62.7%