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UBF23273.1

Arc-Vir

MZ334525__UBF23273.1__HATV-2-gp122__00122

Identity

Accession:
MZ334525 ↗
Protein ID:
UBF23273.1 ↗
Kingdom:
archaea

Quality

81.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-38
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1twfI02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.76 61.0 4.88e-01 89.5% 53.9%
2jo6A00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.73 61.0 4.48e-01 100.0% 66.4%
2nutB02 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.72 58.0 5.08e-01 97.4% 61.3%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 48.0 4.13e-01 100.0% 46.9%
1gpqB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.66 52.0 3.64e-01 89.5% 56.2%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 49.0 4.29e-01 89.5% 66.2%
3a5zD02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 45.0 3.91e-01 97.4% 45.3%
1uebA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 44.0 3.82e-01 84.2% 46.0%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.62 50.0 4.69e-01 89.5% 87.5%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 46.0 3.61e-01 89.5% 38.5%
5bukB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 50.0 2.92e-01 100.0% 37.1%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 47.0 4.37e-01 89.5% 65.4%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.60 43.0 4.04e-01 89.5% 96.4%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 44.0 3.99e-01 92.1% 60.7%
5l37C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.58 43.0 3.39e-01 84.2% 44.2%
6sulA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 43.0 3.36e-01 94.7% 38.0%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 45.0 4.31e-01 92.1% 80.9%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 44.0 3.91e-01 97.4% 81.5%
3ho6B00 3.40.50.11050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MARTX cysteine protease (CPD) domain 0.57 43.0 2.79e-01 97.4% 58.6%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 44.0 4.12e-01 89.5% 74.5%
1b9mB02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 39.0 3.29e-01 97.4% 38.9%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.56 43.0 4.13e-01 89.5% 73.9%
2eifA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 39.0 3.50e-01 92.1% 49.2%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.56 42.0 3.98e-01 89.5% 65.4%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 45.0 3.86e-01 100.0% 71.2%
4m52A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 43.0 3.26e-01 100.0% 66.1%
4joiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 39.0 2.76e-01 78.9% 74.5%
5zg8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 37.0 2.97e-01 78.9% 43.1%
2fp8B00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 40.0 2.52e-01 100.0% 12.9%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.53 42.0 3.14e-01 89.5% 34.7%
1efzA00 3.20.20.105 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Queuine tRNA-ribosyltransferase-like 0.53 41.0 2.47e-01 100.0% 18.5%
4tvcA01 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.53 42.0 2.83e-01 100.0% 37.8%
5jldA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.53 38.0 2.38e-01 94.7% 13.0%
4uoiC00 3.30.160.890 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hepatitis C virus envelope glycoprotein E1, chain C 0.52 38.0 3.60e-01 86.8% 74.5%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 39.0 3.55e-01 92.1% 74.6%
1cw1A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.51 36.0 2.22e-01 100.0% 18.8%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.51 34.0 3.14e-01 78.9% 55.2%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 37.0 3.37e-01 97.4% 88.4%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.50 36.0 3.47e-01 89.5% 74.5%
4l2iB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.50 38.0 2.41e-01 100.0% 28.9%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.50 35.0 3.38e-01 97.4% 62.7%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4932308 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.86 71.0 7.41e-01 92.1% 100.0%
4932814 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.85 65.0 6.73e-01 89.5% 94.3%
4438701 375.1.1.272 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF26372 0.85 67.0 6.21e-01 92.1% 69.4%
4947252 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.84 65.0 6.21e-01 89.5% 73.3%
4989647 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.83 63.0 5.71e-01 89.5% 60.0%
4276264 375.8.1.5 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › PF26372 0.83 64.0 6.13e-01 86.8% 73.3%
4948719 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.82 69.0 5.15e-01 100.0% 43.0%
4955965 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.81 62.0 5.76e-01 86.8% 66.0%
5031337 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.81 65.0 6.47e-01 92.1% 92.3%
4927544 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.80 64.0 6.61e-01 94.7% 97.1%
5044272 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.80 65.0 6.01e-01 100.0% 72.0%
5061081 375.1.1.83 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-TFIIB 0.80 60.0 5.62e-01 89.5% 66.0%
5030309 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.79 60.0 6.21e-01 84.2% 94.3%
4964214 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.78 62.0 5.61e-01 92.1% 65.5%
3612107 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.78 62.0 5.42e-01 92.1% 63.3%
4517523 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.77 65.0 4.82e-01 97.4% 81.0%
3258369 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.76 63.0 6.33e-01 94.7% 94.7%
3064081 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.76 61.0 5.44e-01 94.7% 65.5%
3595832 375.8.1.0 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.76 60.0 5.42e-01 92.1% 65.5%
4968405 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.76 64.0 4.61e-01 97.4% 73.6%
3482645 375.8.1.0 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.76 58.0 5.91e-01 89.5% 97.1%
3819668 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.75 58.0 5.66e-01 89.5% 77.3%
5084051 375.8.1.7 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › TRAM 0.75 60.0 6.22e-01 92.1% 100.0%
None 0.75 61.0 3.61e-01 94.7% 11.8%
3919221 375.1.1.30 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 0.75 61.0 5.03e-01 97.4% 53.3%
3593754 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.75 60.0 5.70e-01 89.5% 88.9%
5058552 375.1.1.83 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-TFIIB 0.75 58.0 5.41e-01 94.7% 68.0%
5024226 375.1.1.83 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-TFIIB 0.75 57.0 5.51e-01 86.8% 73.3%
4369866 375.1.1.37 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.74 59.0 5.88e-01 92.1% 87.5%
5061180 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.74 62.0 4.69e-01 97.4% 85.3%
4946886 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 62.0 5.68e-01 97.4% 74.0%
4344077 375.8.1.0 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.72 55.0 5.49e-01 89.5% 82.5%
3990974 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 58.0 5.39e-01 94.7% 72.0%
4119222 375.1.1.135 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Lar_restr_allev 0.72 55.0 5.22e-01 92.1% 84.0%
4153913 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 59.0 4.71e-01 100.0% 89.4%
3503021 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.71 55.0 5.60e-01 89.5% 100.0%
4989457 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 54.0 5.04e-01 86.8% 80.0%
3040109 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.71 56.0 5.32e-01 94.7% 74.5%
3792293 375.1.1.30 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 0.70 58.0 4.54e-01 100.0% 43.5%
3521805 376.1.1.20 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.69 55.0 4.53e-01 94.7% 53.3%
4944397 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 53.0 4.92e-01 86.8% 82.0%
4854353 375.1.1.37 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.69 52.0 4.73e-01 84.2% 60.4%
3967552 375.1.1.71 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF2387 0.69 52.0 5.05e-01 89.5% 80.0%
4951495 375.1.1.299 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.68 52.0 5.17e-01 89.5% 87.5%
4579534 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.67 48.0 4.06e-01 97.4% 44.6%
5034626 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 56.0 5.55e-01 94.7% 90.0%
3933015 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 51.0 4.92e-01 97.4% 81.6%
3296731 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.66 46.0 4.46e-01 94.7% 64.4%
5051552 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.66 54.0 4.16e-01 100.0% 46.0%
5002755 375.1.1.299 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.65 51.0 4.94e-01 89.5% 82.2%
3264049 376.1.1.20 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.65 50.0 3.95e-01 94.7% 42.1%
5026901 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 50.0 4.42e-01 89.5% 71.7%
5051764 622.4.1.0 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.64 50.0 3.44e-01 94.7% 30.3%
3238367 376.1.1.20 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.63 51.0 4.25e-01 97.4% 64.0%
3553625 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.62 47.0 4.40e-01 92.1% 81.8%
5047657 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 48.0 4.45e-01 94.7% 81.8%
3935356 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.62 43.0 3.07e-01 86.8% 23.3%
2028019 4.1.1.136 beta barrels › SH3 › SH3 › SH3 › NMD_SH3 0.61 48.0 4.19e-01 94.7% 57.6%
3343242 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 48.0 4.79e-01 92.1% 87.5%
4935681 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 38.0 3.55e-01 89.5% 52.7%
3786078 109.4.1.1764 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28917 0.55 45.0 2.57e-01 97.4% 8.9%
3762981 391.1.1.8 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › VWF 0.55 37.0 3.74e-01 73.7% 87.5%
None 0.55 43.0 2.73e-01 97.4% 22.2%
3579494 5.1.5.171 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Str_synth 0.54 41.0 2.65e-01 100.0% 19.6%
3721794 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 39.0 3.61e-01 89.5% 65.0%
5005811 3414.1.1.0 beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein 0.52 39.0 3.21e-01 94.7% 40.0%
3512480 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.52 36.0 3.62e-01 73.7% 95.0%
4104975 2002.1.1.73 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT 0.51 39.0 2.36e-01 100.0% 18.6%