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UBF23308.1

Arc-Vir

MZ334526__UBF23308.1__HRTV-29-gp30__00030

Identity

Accession:: MZ334526 ↗
Protein ID:: UBF23308.1 ↗
Kingdom:: archaea

Quality

72.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kirjokansivirales› Haloferuviridae› Dpdavirus› Halorubrum_tailed_virus_29

TaxID: 2878010

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 453-584

PDB

Domain cluster: rep: KF147891.1__QKE11213.1__PaBG_00148__00148__D7-109

CATH (24)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5figA00	1.20.1270.360	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.63	46.0	5.16e-01	84.8%	100.0%
3kavA00	1.20.1270.360	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.62	46.0	5.05e-01	90.9%	100.0%
2q9rA01	1.20.1590.10	Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like	0.61	44.0	3.87e-01	87.1%	49.7%
1v9vA01	1.20.1480.20	Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › MAST3 pre-PK domain-like	0.59	42.0	4.79e-01	82.6%	100.0%
2ip6A00	1.20.1440.140	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) ›	0.59	38.0	4.53e-01	84.1%	97.7%
1lkoA01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.59	46.0	4.54e-01	100.0%	75.9%
4qndA00	1.20.1280.290	Mainly Alpha › Up-down Bundle › Monooxygenase ›	0.59	37.0	4.12e-01	74.2%	83.5%
7qihA01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.57	26.0	2.94e-01	71.2%	52.5%
2ntxA01	1.20.58.2010	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › PRONE domain, subdomain 1	0.55	44.0	3.88e-01	89.4%	72.9%
5dkoA02	1.10.3900.10	Mainly Alpha › Orthogonal Bundle › YacF-like › YacF-like	0.54	37.0	3.51e-01	71.2%	65.9%
2e8gA01	1.20.1440.150	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) ›	0.54	45.0	4.69e-01	93.2%	100.0%
3ck6C02	1.20.58.340	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region	0.53	40.0	4.15e-01	77.3%	86.6%
1o5hA00	1.20.120.680	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle	0.53	44.0	3.94e-01	92.4%	73.5%
1un8A02	1.25.40.340	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › DhaL domain	0.53	44.0	3.96e-01	91.7%	98.4%
1yuzB01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.53	42.0	4.17e-01	98.5%	80.4%
1wvtA00	1.20.1200.10	Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like	0.53	41.0	4.00e-01	83.3%	79.1%
2vs0A00	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.52	31.0	3.73e-01	100.0%	91.5%
2v0pA00	1.25.40.540	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TAP42-like family	0.52	44.0	3.81e-01	93.9%	59.2%
1y9qA01	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.52	32.0	3.79e-01	92.4%	95.3%
1gnlA01	1.20.1270.20	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.51	38.0	3.74e-01	87.9%	71.9%
1mhyD00	1.10.620.20	Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A	0.51	45.0	3.09e-01	100.0%	43.5%
1e3mB04	1.10.1420.10	Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 ›	0.51	37.0	3.55e-01	75.8%	69.1%
1sumB01	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.50	36.0	3.94e-01	75.0%	91.6%
1zkrB00	1.20.920.50	Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A ›	0.50	35.0	3.46e-01	100.0%	66.2%

ECOD (37)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3621306	150.1.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin	0.64	55.0	5.41e-01	93.9%	100.0%
4021907	633.23.1.0 ↗	alpha bundles › Bromodomain-like › Claudin › Claudin	0.62	55.0	5.18e-01	97.0%	90.0%
3230238	174.1.1.0 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain	0.62	54.0	5.04e-01	97.0%	84.7%
3919997	3615.1.1.0 ↗	alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain	0.62	50.0	5.26e-01	93.2%	96.7%
3513588	174.1.1.14 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › NKAIN	0.62	48.0	5.24e-01	89.4%	100.0%
3176858	174.1.1.0 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain	0.62	54.0	5.32e-01	96.2%	93.6%
3991674	633.21.1.0 ↗	alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107	0.61	51.0	5.22e-01	90.9%	100.0%
3998922	633.21.1.0 ↗	alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107	0.61	55.0	4.18e-01	100.0%	48.4%
3621305	150.1.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin	0.61	52.0	4.98e-01	93.2%	94.7%
3908020	633.21.1.0 ↗	alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107	0.61	53.0	5.31e-01	100.0%	95.6%
3214390	633.21.1.0 ↗	alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107	0.61	54.0	5.30e-01	97.7%	97.9%
4021431	174.1.1.0 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain	0.59	53.0	5.26e-01	99.2%	95.0%
4956279	633.13.1.1 ↗	alpha bundles › Bromodomain-like › DsbB-like › DsbB-like › DsbB	0.59	51.0	5.00e-01	94.7%	91.4%
4019691	174.1.1.0 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain	0.58	50.0	4.95e-01	94.7%	94.3%
3905499	633.7.1.5 ↗	alpha bundles › Bromodomain-like › Bacillus cereus metalloprotein-like › Bacillus cereus metalloprotein-like › Piezo_TM1-24	0.58	45.0	4.65e-01	96.2%	87.2%
3413600	174.1.1.1 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin	0.57	48.0	4.91e-01	91.7%	96.2%
3918970	633.7.1.5 ↗	alpha bundles › Bromodomain-like › Bacillus cereus metalloprotein-like › Bacillus cereus metalloprotein-like › Piezo_TM1-24	0.57	47.0	4.88e-01	97.7%	100.0%
3860568	150.1.1.80 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Myelin_PLP	0.56	50.0	4.33e-01	97.7%	92.2%
5010301	604.5.1.2 ↗	alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU	0.56	49.0	4.34e-01	100.0%	65.0%
4033307	604.5.1.2 ↗	alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU	0.56	50.0	4.32e-01	100.0%	95.2%
3739903	174.1.1.0 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain	0.55	48.0	4.53e-01	97.0%	81.9%
3450026	633.4.1.1 ↗	alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI	0.55	47.0	4.47e-01	96.2%	98.8%
4947225	604.5.1.0 ↗	alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895)	0.55	49.0	4.42e-01	99.2%	99.4%
5001131	604.5.1.0 ↗	alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895)	0.53	47.0	4.29e-01	100.0%	99.5%
3882066	3291.1.1.124 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Bap31	0.53	38.0	3.60e-01	75.0%	78.8%
5046923	601.14.1.1 ↗	alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › Hemerythrin	0.53	43.0	3.87e-01	87.9%	75.7%
4084468	5054.1.1.2 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans	0.53	40.0	3.12e-01	79.5%	87.5%
3584903	633.21.1.0 ↗	alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107	0.52	45.0	4.27e-01	95.5%	82.6%
3604134	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.52	37.0	3.45e-01	75.0%	81.7%
None	—		0.52	37.0	2.37e-01	100.0%	13.8%
3760737	601.16.1.17 ↗	alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › PF27561	0.51	35.0	3.44e-01	74.2%	64.3%
3237156	604.12.1.4 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT1	0.51	37.0	3.72e-01	75.0%	86.7%
3416724	601.1.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin	0.51	35.0	3.40e-01	70.5%	68.0%
3564754	604.1.1.96 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Bap31	0.51	36.0	3.64e-01	73.5%	97.0%
3596222	3930.2.1.0 ↗	alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in endoribonuclease Dicer › Helical bundle in endoribonuclease Dicer	0.51	38.0	4.16e-01	100.0%	99.0%
3963070	604.1.1.263 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF3375	0.50	37.0	3.69e-01	77.3%	90.0%
3588162	1075.4.1.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane	0.50	44.0	3.42e-01	100.0%	93.4%

D2 medium residues 39-84_134-209

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1t6aA02	3.30.310.120	Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein	0.60	23.0	2.88e-01	77.9%	52.6%
3eb8B01	3.10.450.460	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain	0.55	25.0	3.33e-01	81.1%	80.3%
6c6sD02	2.30.30.30	Mainly Beta › Roll › SH3 type barrels. ›	0.55	27.0	3.45e-01	93.4%	86.7%
3p8bB02	2.30.30.30	Mainly Beta › Roll › SH3 type barrels. ›	0.54	28.0	3.55e-01	92.6%	90.3%
1v1cA00	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.52	29.0	3.68e-01	89.3%	97.1%
1vq8Q00	2.30.30.70	Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21	0.52	27.0	3.03e-01	82.8%	64.2%
3c4sA00	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.50	24.0	3.27e-01	77.9%	93.0%

ECOD (17)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3942998	4056.1.1.0 ↗	beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein	0.70	41.0	5.10e-01	80.3%	100.0%
5039293	4056.1.1.0 ↗	beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein	0.69	42.0	5.23e-01	80.3%	100.0%
4034031	4056.1.1.0 ↗	beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein	0.69	38.0	4.94e-01	74.6%	100.0%
3964370	4056.1.1.0 ↗	beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein	0.68	45.0	5.31e-01	91.0%	96.5%
4031151	4056.1.1.0 ↗	beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein	0.68	42.0	5.13e-01	82.0%	100.0%
3949049	4056.1.1.0 ↗	beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein	0.68	44.0	5.21e-01	94.3%	97.6%
3976834	4.1.1.156 ↗	beta barrels › SH3 › SH3 › SH3 › DUF2158	0.58	24.0	3.58e-01	75.4%	92.0%
3440094	4.1.1.3 ↗	beta barrels › SH3 › SH3 › SH3 › KOW	0.58	28.0	3.78e-01	92.6%	91.7%
3675511	4.1.1.75 ↗	beta barrels › SH3 › SH3 › SH3 › NdhS	0.57	29.0	3.40e-01	92.6%	68.8%
3456496	4.1.1.75 ↗	beta barrels › SH3 › SH3 › SH3 › NdhS	0.56	28.0	2.93e-01	92.6%	47.8%
3727542	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.56	32.0	3.60e-01	95.1%	73.3%
1793524	4.1.1.14 ↗	beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e	0.55	31.0	3.43e-01	92.6%	66.7%
157323	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.52	29.0	3.68e-01	89.3%	97.1%
3684131	2485.1.1.1 ↗	a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin	0.51	28.0	3.23e-01	80.3%	72.9%
4590767	219.1.1.3 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH	0.51	45.0	3.20e-01	100.0%	72.9%
3188712	4.1.1.225 ↗	beta barrels › SH3 › SH3 › SH3 › DUF7025	0.51	34.0	3.66e-01	93.4%	82.0%
4168737	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.50	28.0	3.30e-01	93.4%	83.8%

D3 medium residues 85-133_210-235_309-376

PDB

Domain cluster: representative

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2i0mA02	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.60	30.0	3.55e-01	72.7%	68.3%
2xzmO02	1.10.287.10	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding	0.59	26.0	3.67e-01	72.7%	84.3%
3dcfA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.59	29.0	2.96e-01	70.6%	45.1%
4a64A01	1.20.1310.10	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats	0.58	34.0	3.57e-01	81.8%	62.1%
4dwlA00	1.20.1440.60	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence	0.55	31.0	3.53e-01	100.0%	72.2%
3l1nA02	1.20.1280.140	Mainly Alpha › Up-down Bundle › Monooxygenase ›	0.51	27.0	3.43e-01	77.6%	83.9%
2a6mA00	3.30.70.1290	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transposase IS200-like	0.51	32.0	3.36e-01	100.0%	68.5%
4rrfA01	3.50.80.10	Alpha Beta › 3-Layer(bba) Sandwich › D-tyrosyl-trna(Tyr) Deacylase; Chain: A; › D-tyrosyl-tRNA(Tyr) deacylase	0.50	25.0	2.60e-01	90.2%	47.1%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5042297	5079.1.1.1 ↗	alpha duplicates or obligate multimers › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › MgtE	0.57	43.0	3.91e-01	99.3%	60.0%
3574038	109.4.1.235 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SRP68	0.53	33.0	2.24e-01	100.0%	18.0%
3492810	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.52	29.0	3.38e-01	72.0%	77.0%
3222805	5054.1.1.8 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2	0.50	35.0	2.82e-01	70.6%	88.9%
3593736	192.7.1.0 ↗	alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm	0.50	30.0	3.59e-01	80.4%	86.0%

D4 medium residues 601-736

PDB

Domain cluster: rep: IMGVR_UViG_3300028191_000341-3300028191-Ga0265595_10096261__D1-126

D5 medium residues 737-819

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1kkhA01	3.30.230.10	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 ›	0.55	43.0	3.39e-01	86.7%	88.4%
7qefA01	3.20.20.300	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase, family 3, N-terminal domain	0.52	38.0	2.56e-01	79.5%	48.2%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4061413	109.4.1.1685 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27595, PF30849	0.50	34.0	2.23e-01	71.1%	22.4%