Back to structures

UBF23360.1

Arc-Vir

MZ334527__UBF23360.1__HATV-3-gp10__00010

Identity

Accession:
MZ334527 ↗
Protein ID:
UBF23360.1 ↗
Kingdom:
archaea

Quality

61.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 27-76
PDB
Domain cluster: representative
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ktpB02 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.74 51.0 4.28e-01 84.0% 43.9%
1h54A03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.73 50.0 4.41e-01 84.0% 48.6%
2db2A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.73 49.0 3.96e-01 70.0% 42.6%
4g2sA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.70 53.0 4.15e-01 82.0% 76.4%
3wirA03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.70 50.0 4.47e-01 88.0% 55.1%
2i5bA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.69 52.0 3.26e-01 82.0% 44.2%
2rcqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.69 49.0 3.54e-01 76.0% 36.9%
2yt4A03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.68 42.0 3.31e-01 86.0% 29.8%
3sh4A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.68 47.0 3.14e-01 74.0% 46.7%
3lm3A02 3.30.1120.110 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.67 49.0 3.91e-01 80.0% 68.2%
1cbiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 49.0 3.59e-01 80.0% 30.1%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.66 46.0 3.54e-01 72.0% 53.1%
1pz7A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.66 47.0 3.22e-01 76.0% 51.1%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.66 48.0 3.67e-01 88.0% 33.3%
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.65 47.0 4.05e-01 80.0% 90.5%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.65 46.0 2.89e-01 74.0% 38.8%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 48.0 3.64e-01 82.0% 66.9%
2nn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.64 46.0 3.17e-01 78.0% 30.4%
3ms6A00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.64 50.0 4.18e-01 88.0% 72.2%
2n54B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 50.0 4.59e-01 90.0% 65.2%
1vpkA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.64 50.0 3.76e-01 86.0% 52.5%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 41.0 3.48e-01 70.0% 38.2%
1wquA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.63 50.0 3.85e-01 88.0% 41.2%
3zl8A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.63 45.0 3.00e-01 80.0% 39.4%
2a6aB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.63 45.0 3.43e-01 88.0% 32.8%
3jbtA05 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 43.0 2.59e-01 72.0% 32.2%
2qzuA02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.62 45.0 3.82e-01 78.0% 51.8%
2oq1A03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.62 51.0 4.07e-01 92.0% 53.0%
3asiA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 46.0 3.13e-01 82.0% 34.8%
5llwA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 47.0 3.85e-01 86.0% 87.0%
2jo6A00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.60 44.0 3.44e-01 94.0% 36.4%
4joiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 45.0 3.41e-01 88.0% 73.0%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.59 44.0 3.54e-01 82.0% 51.0%
6w0pA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.59 49.0 2.88e-01 92.0% 29.5%
2gk4A00 3.40.50.10300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like 0.58 46.0 3.08e-01 90.0% 21.0%
3hi0A02 3.30.420.150 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 0.58 47.0 3.19e-01 90.0% 79.2%
2e4qA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.57 46.0 3.58e-01 88.0% 51.9%
1vkdA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 41.0 2.58e-01 78.0% 46.6%
3n54B03 3.30.300.210 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Nutrient germinant receptor protein C, domain 3 0.57 42.0 3.04e-01 80.0% 38.5%
3fqmA01 2.20.25.210 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B 0.57 38.0 3.61e-01 86.0% 55.7%
1y4oA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.56 43.0 3.58e-01 92.0% 68.3%
2dmwA01 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.56 47.0 3.59e-01 94.0% 54.3%
2kjpA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.55 39.0 3.45e-01 78.0% 84.8%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.55 44.0 4.00e-01 88.0% 86.6%
1tpmA00 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.55 44.0 4.46e-01 94.0% 100.0%
4bdxA00 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.55 44.0 3.79e-01 92.0% 75.9%
3ossC00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.54 36.0 3.42e-01 70.0% 87.7%
1e88A03 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.53 40.0 4.20e-01 88.0% 100.0%
4qdiA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.53 37.0 2.54e-01 78.0% 39.7%
1ti2A01 2.20.25.340 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.52 34.0 3.27e-01 84.0% 53.0%
5b7gA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.51 41.0 2.62e-01 88.0% 20.5%
2rk9B00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 38.0 3.00e-01 84.0% 53.8%
1o9aA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.51 38.0 3.95e-01 88.0% 100.0%
4l2iB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.50 36.0 2.35e-01 78.0% 21.3%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3370663 896.1.1.1 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e 0.77 51.0 4.88e-01 70.0% 69.5%
4969523 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.76 52.0 5.08e-01 72.0% 68.5%
4024012 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.76 53.0 3.48e-01 74.0% 96.5%
5007927 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.75 51.0 3.69e-01 70.0% 58.6%
3509004 210.1.2.5 a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Peptidase_C69 0.74 62.0 3.87e-01 94.0% 38.8%
5023931 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.74 50.0 4.46e-01 70.0% 51.4%
3241311 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.74 50.0 3.38e-01 72.0% 31.1%
3741358 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.71 51.0 3.28e-01 76.0% 46.4%
4989110 884.1.1.1 a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.71 50.0 4.32e-01 90.0% 47.5%
1499696 12.6.1.1 beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro_65C 0.70 50.0 4.54e-01 88.0% 57.6%
5061635 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 50.0 2.84e-01 90.0% 7.2%
1868024 66.1.1.1 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.69 41.0 4.42e-01 82.0% 70.7%
5004521 4317.1.1.0 a+b duplicates or obligate multimers › YdfO-like › YdfO-like › YdfO-like 0.69 47.0 4.42e-01 78.0% 60.0%
5001101 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.68 49.0 4.61e-01 78.0% 63.3%
3219544 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.67 49.0 3.03e-01 78.0% 18.7%
3740759 4099.1.1.3 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spc24 0.67 49.0 4.63e-01 78.0% 66.7%
5008603 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.67 53.0 3.59e-01 88.0% 34.7%
3450097 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.67 47.0 3.52e-01 74.0% 71.4%
4368436 5.1.4.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.66 48.0 2.99e-01 78.0% 96.6%
3169161 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 55.0 3.24e-01 96.0% 95.4%
3673032 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 48.0 4.29e-01 78.0% 90.0%
4068244 2484.1.1.49 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydant_A_N 0.66 47.0 3.37e-01 76.0% 66.7%
5016447 884.1.1.1 a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.65 49.0 4.14e-01 94.0% 48.2%
3784839 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.65 46.0 3.67e-01 72.0% 85.0%
4034138 7520.1.1.0 a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like 0.65 48.0 3.60e-01 82.0% 78.2%
4990916 283.2.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.64 45.0 3.64e-01 74.0% 38.0%
3323191 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.64 45.0 4.00e-01 78.0% 50.7%
5049349 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 54.0 3.77e-01 94.0% 51.6%
4952059 809.2.1.0 a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.63 47.0 4.15e-01 84.0% 90.0%
4305933 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.63 43.0 4.18e-01 86.0% 65.5%
5075279 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 52.0 3.93e-01 92.0% 41.7%
5051015 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 52.0 3.66e-01 94.0% 47.7%
4977657 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 53.0 3.75e-01 94.0% 53.3%
1014 66.1.1.2 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske_2 0.62 41.0 4.33e-01 84.0% 77.8%
3571503 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.62 49.0 4.77e-01 88.0% 96.4%
3226237 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.61 49.0 3.10e-01 88.0% 18.0%
5044629 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 47.0 3.63e-01 92.0% 37.4%
3168104 5.1.5.52 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › EMC1_C 0.60 51.0 2.86e-01 100.0% 21.0%
3847296 391.1.2.7 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › fn1 0.60 44.0 4.80e-01 80.0% 100.0%
3893497 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.60 44.0 4.74e-01 80.0% 100.0%
3405538 219.1.1.111 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core, Rad4 0.59 48.0 3.08e-01 98.0% 97.3%
4933213 375.1.1.31 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.59 42.0 3.82e-01 78.0% 61.4%
4095799 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 49.0 3.11e-01 96.0% 50.2%
3576662 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 40.0 2.56e-01 78.0% 42.7%
3974425 9.4.1.0 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.57 43.0 3.57e-01 84.0% 55.8%
3480221 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.57 44.0 4.14e-01 88.0% 69.2%
222713 391.1.1.1 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › fn1 0.57 44.0 4.57e-01 84.0% 95.6%
3743864 109.4.1.1787 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup188_N-subdom_III 0.57 46.0 2.48e-01 90.0% 4.1%
4989913 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 37.0 2.39e-01 82.0% 12.5%
3476979 391.1.2.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.54 42.0 3.41e-01 88.0% 43.7%
4152365 391.1.1.1 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › fn1 0.53 41.0 4.31e-01 86.0% 97.8%
5036656 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 39.0 3.74e-01 90.0% 66.7%
3550232 389.1.1.1 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF 0.52 41.0 3.51e-01 88.0% 72.9%
4956733 375.1.1.31 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.51 35.0 3.33e-01 78.0% 68.6%
4457771 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.50 38.0 3.42e-01 86.0% 68.0%