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UBF23442.1

Arc-Vir

MZ334528__UBF23442.1__HRTV-28-gp4__00005

Identity

Accession:
MZ334528 ↗
Protein ID:
UBF23442.1 ↗
Kingdom:
archaea

Quality

77.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Suolaviridae› Pormufvirus› Halorubrum_tailed_virus_28

TaxID: 2878009

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-57
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1l1oC02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.84 59.0 6.66e-01 88.2% 100.0%
2aklA01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.76 47.0 5.08e-01 80.4% 74.4%
4gnxC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 63.0 4.25e-01 100.0% 37.2%
3m7nA03 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.68 42.0 4.73e-01 78.4% 88.2%
2ysiA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.67 43.0 5.02e-01 96.1% 100.0%
2f4mA02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.66 47.0 4.82e-01 76.5% 92.0%
2jxwA00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.66 45.0 3.97e-01 76.5% 48.0%
1x3zA04 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.63 45.0 4.49e-01 78.4% 92.6%
3le4A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.62 43.0 4.26e-01 100.0% 69.1%
1yw5A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.62 43.0 4.10e-01 86.3% 60.3%
2kxqA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.62 38.0 4.19e-01 80.4% 100.0%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.59 42.0 2.99e-01 78.4% 69.3%
3bp6B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 39.0 3.27e-01 74.5% 75.0%
3a32A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.55 44.0 3.29e-01 94.1% 65.2%
3netB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.53 46.0 3.76e-01 100.0% 68.4%
1zuuA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 40.0 3.93e-01 84.3% 92.9%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 40.0 4.06e-01 86.3% 89.8%
4f80A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 35.0 3.03e-01 72.5% 90.3%
1xeaA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 40.0 2.85e-01 92.2% 84.4%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 41.0 3.77e-01 100.0% 84.0%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4014975 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.85 56.0 6.59e-01 82.4% 100.0%
5057462 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.81 68.0 6.69e-01 100.0% 87.3%
5033455 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.80 64.0 6.76e-01 86.3% 100.0%
5004736 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.78 61.0 5.86e-01 100.0% 75.9%
4980029 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.77 68.0 5.39e-01 98.0% 57.0%
5046714 375.8.1.0 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.77 56.0 6.15e-01 76.5% 97.5%
5029813 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.75 65.0 6.41e-01 100.0% 90.9%
3827584 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.74 66.0 4.45e-01 100.0% 39.5%
5081496 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 50.0 5.48e-01 78.4% 92.5%
3948622 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 52.0 5.50e-01 78.4% 100.0%
5030452 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 52.0 5.55e-01 78.4% 88.9%
3592215 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.71 45.0 4.50e-01 70.6% 62.3%
4927803 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 54.0 5.49e-01 82.4% 84.0%
4029567 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.68 61.0 4.10e-01 100.0% 43.2%
3900931 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.68 44.0 4.59e-01 70.6% 73.3%
4882787 375.1.1.67 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › NrdR-like_N 0.68 48.0 5.01e-01 74.5% 85.1%
3303020 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 51.0 5.18e-01 82.4% 86.0%
4636455 375.1.1.299 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.66 47.0 4.93e-01 76.5% 86.7%
3263564 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.63 41.0 4.50e-01 86.3% 97.1%
4425056 64.1.1.4 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW_1 0.63 41.0 4.47e-01 100.0% 97.1%
4178833 2.1.1.287 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Zn_ribbon_TiaS 0.61 40.0 2.88e-01 84.3% 21.2%
3750331 3246.1.1.0 ↗ few secondary structure elements › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins 0.60 44.0 3.72e-01 80.4% 48.9%
4338996 375.1.1.60 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PriA_CRR 0.60 42.0 4.03e-01 86.3% 65.0%
4964575 375.1.1.346 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7838 0.59 43.0 4.59e-01 76.5% 97.5%
5072382 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.58 47.0 3.80e-01 92.2% 68.0%
3614553 3409.1.1.0 ↗ a+b duplicates or obligate multimers › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain 0.58 41.0 2.84e-01 76.5% 88.4%
3328618 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.58 40.0 4.23e-01 86.3% 97.5%
3787905 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.58 44.0 4.08e-01 90.2% 90.0%
3233356 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 40.0 3.12e-01 74.5% 61.7%
3622902 375.1.1.89 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-LITAF-like 0.57 41.0 4.25e-01 78.4% 88.9%
3720866 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 40.0 3.75e-01 76.5% 60.0%
3597992 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.56 42.0 4.13e-01 80.4% 98.2%
4253165 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.52 43.0 3.28e-01 100.0% 65.0%