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UBF23461.1

Arc-Vir

MZ334528__UBF23461.1__HRTV-28-gp23__00024

Identity

Accession:
MZ334528 ↗
Protein ID:
UBF23461.1 ↗
Kingdom:
archaea

Quality

75.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Suolaviridae› Pormufvirus› Halorubrum_tailed_virus_28

TaxID: 2878009

Cluster

View cluster (33 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 36-158
PDB
Domain cluster: rep: DQ340064.2__ABC61276.1__X__00022__D272-425
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2e0zC03 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.78 58.0 6.49e-01 99.2% 96.9%
2pk8A00 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.77 54.0 6.09e-01 95.1% 93.6%
3dktA02 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.75 54.0 6.14e-01 99.2% 95.8%
1ohgA02 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.72 57.0 6.21e-01 100.0% 98.1%
1yueA03 3.30.2320.40 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › 0.64 57.0 5.81e-01 100.0% 96.7%
4efaE02 3.30.2320.30 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › ATP synthase, E subunit, C-terminal 0.64 44.0 4.36e-01 95.1% 67.4%
2r5vB02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.59 42.0 3.62e-01 73.2% 83.6%
2bx2L02 3.40.1260.20 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › Ribonuclease E, catalytic domain 0.54 40.0 4.27e-01 91.9% 88.2%
5u78C00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 27.0 2.83e-01 70.7% 50.0%
3vb0A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 40.0 3.95e-01 78.0% 87.6%
4b45A02 3.30.1330.20 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain 0.53 39.0 3.98e-01 78.0% 80.5%
3ec3A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 32.0 3.32e-01 70.7% 66.1%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3967169 298.4.1.2 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › FliH 0.77 44.0 4.45e-01 95.1% 56.0%
4935588 298.4.1.1 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E 0.75 45.0 4.15e-01 95.1% 48.4%
4070529 298.4.1.1 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E 0.72 42.0 3.87e-01 95.1% 45.0%
5083777 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.72 68.0 4.95e-01 100.0% 47.3%
2841997 2485.3.1.0 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.71 67.0 4.67e-01 100.0% 51.0%
4890673 2485.3.1.9 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 0.71 65.0 4.67e-01 100.0% 53.6%
5002389 2485.3.1.0 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.71 67.0 5.00e-01 100.0% 56.4%
4404129 298.4.1.1 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E 0.70 41.0 3.55e-01 95.1% 37.4%
5041371 2485.3.1.0 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.69 64.0 4.70e-01 100.0% 51.3%
3387325 298.4.1.2 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › FliH 0.69 44.0 3.84e-01 96.7% 44.6%
5044279 298.4.1.1 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E 0.69 45.0 4.36e-01 95.9% 60.9%
4954548 2485.3.1.0 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.68 63.0 4.77e-01 100.0% 54.9%
1153872 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.66 36.0 4.87e-01 76.4% 98.5%
2639625 2485.3.1.18 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.66 61.0 4.60e-01 100.0% 50.7%
3587769 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.66 60.0 4.53e-01 100.0% 53.4%
4409477 3008.1.1.0 ↗ a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.65 38.0 4.73e-01 72.4% 95.9%
4097188 298.4.1.2 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › FliH 0.64 43.0 4.51e-01 97.6% 74.5%
5042513 298.4.1.1 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E 0.64 38.0 3.92e-01 95.9% 59.2%
3760846 2008.1.1.7 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 0.64 39.0 3.32e-01 80.5% 36.5%
3977525 2485.3.1.4 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_P2 0.64 59.0 4.27e-01 100.0% 48.6%
2546181 2485.3.1.13 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp13-like 0.64 59.0 4.29e-01 100.0% 54.8%
4412841 298.4.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.63 43.0 4.17e-01 96.7% 63.7%
2857594 2485.1.1.6 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › FHIPEP 0.60 35.0 4.13e-01 70.7% 82.4%
4079005 298.4.1.6 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › T3SS_SCTL 0.60 42.0 4.26e-01 96.7% 71.2%
4675036 2485.1.1.6 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › FHIPEP 0.58 35.0 3.87e-01 71.5% 74.0%
4612008 2485.1.1.6 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › FHIPEP 0.57 34.0 3.73e-01 70.7% 70.5%
3444162 3008.1.1.0 ↗ a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.53 37.0 4.17e-01 87.0% 96.7%
3813073 2004.1.1.73 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.52 37.0 3.23e-01 74.0% 72.1%
4610422 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.51 45.0 3.30e-01 100.0% 36.1%
3666792 3008.1.1.0 ↗ a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.50 36.0 3.81e-01 74.8% 97.3%