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UBF23508.1

Arc-Vir

MZ334528__UBF23508.1__HRTV-28-gp70__00071

Identity

Accession:
MZ334528 ↗
Protein ID:
UBF23508.1 ↗
Kingdom:
archaea

Quality

85.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 20-78
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sd4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 62.0 6.04e-01 100.0% 82.8%
2g9wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 61.0 5.84e-01 100.0% 80.6%
1yg2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 62.0 5.63e-01 100.0% 70.9%
3bz6A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 59.0 5.41e-01 100.0% 69.2%
2xubA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 64.0 5.51e-01 100.0% 70.7%
3dplC03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 59.0 5.30e-01 100.0% 69.9%
3pvlA03 1.20.80.10 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.67 53.0 4.32e-01 93.2% 44.9%
1mzbA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 54.0 4.96e-01 100.0% 67.1%
6qpqB00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.66 58.0 5.25e-01 100.0% 85.2%
2fe3B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 57.0 5.10e-01 100.0% 71.8%
1u5tB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 58.0 5.53e-01 100.0% 88.4%
4yiiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 54.0 5.17e-01 100.0% 88.9%
3qqaA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 50.0 5.03e-01 91.5% 86.4%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.63 50.0 4.12e-01 89.8% 48.2%
4i5jA02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.63 49.0 3.68e-01 88.1% 38.2%
3cxbA03 1.10.1740.30 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain 0.62 42.0 3.85e-01 72.9% 51.9%
2doeA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.62 47.0 4.26e-01 96.6% 60.2%
2lbfB01 1.10.10.1410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.60 44.0 4.23e-01 91.5% 69.6%
2hqrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 51.0 4.31e-01 100.0% 59.4%
2xzmV01 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.60 44.0 4.45e-01 94.9% 80.3%
2r5uC00 1.10.860.10 Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A 0.60 48.0 3.69e-01 89.8% 43.5%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.59 49.0 4.83e-01 89.8% 85.5%
3sp1A02 1.20.120.1910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cysteine-tRNA ligase, C-terminal anti-codon recognition domain 0.57 43.0 3.36e-01 100.0% 34.4%
6oinA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 45.0 4.42e-01 96.6% 83.6%
3k7aM01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 38.0 3.14e-01 89.8% 37.1%
1ornA02 1.10.1670.10 Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 0.55 45.0 3.97e-01 100.0% 66.0%
3i01A01 1.20.1270.30 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.53 40.0 3.01e-01 88.1% 65.0%
3o4fH02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 44.0 3.06e-01 94.9% 91.3%
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.53 44.0 4.47e-01 100.0% 96.5%
2c42A03 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.52 40.0 2.94e-01 94.9% 27.4%
2d7lA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.52 35.0 3.66e-01 72.9% 84.9%
3c8zA02 1.20.120.640 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.52 42.0 3.85e-01 98.3% 68.7%
1xl3C00 1.20.1280.80 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.52 41.0 3.70e-01 96.6% 71.4%
4dwnA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.50 37.0 3.30e-01 84.7% 55.7%
2q0oC00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.50 39.0 3.40e-01 83.1% 82.6%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4304583 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 68.0 6.60e-01 100.0% 87.7%
3490008 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 66.0 6.46e-01 100.0% 87.7%
3472278 101.1.2.206 alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH 0.77 66.0 6.13e-01 100.0% 76.0%
5023135 101.1.2.97 alpha arrays › HTH › HTH › winged helix domain › RPA_C 0.76 66.0 6.14e-01 100.0% 77.3%
4983598 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 66.0 6.43e-01 100.0% 89.2%
3449632 101.1.1.138 alpha arrays › HTH › HTH › Three-helical HTH › GeBP-like_DBD 0.74 61.0 5.27e-01 93.2% 90.5%
5011654 101.1.2.374 alpha arrays › HTH › HTH › winged helix domain › MCM4_WHD 0.73 61.0 5.80e-01 100.0% 79.7%
3795754 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 64.0 5.39e-01 100.0% 67.0%
3270548 101.1.1.3 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.73 57.0 5.68e-01 93.2% 83.3%
3255275 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 58.0 5.78e-01 88.1% 86.7%
3987405 101.1.1.202 alpha arrays › HTH › HTH › Three-helical HTH › HTH_21 0.71 52.0 4.54e-01 93.2% 51.1%
3217621 101.1.2.265 alpha arrays › HTH › HTH › winged helix domain › Stork_head 0.71 64.0 6.03e-01 100.0% 87.1%
3428929 101.1.1.138 alpha arrays › HTH › HTH › Three-helical HTH › GeBP-like_DBD 0.70 58.0 4.90e-01 93.2% 81.0%
3473294 101.1.1.67 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 0.70 52.0 4.80e-01 89.8% 62.7%
4588402 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 59.0 5.57e-01 100.0% 90.7%
3969119 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.69 54.0 5.58e-01 100.0% 92.7%
3983493 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.69 50.0 5.28e-01 91.5% 92.0%
3205161 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 56.0 4.82e-01 100.0% 56.8%
5046208 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 58.0 5.41e-01 100.0% 76.0%
3977558 639.2.1.3 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › BDM 0.67 46.0 4.80e-01 72.9% 96.4%
3788865 101.1.2.374 alpha arrays › HTH › HTH › winged helix domain › MCM4_WHD 0.67 58.0 5.30e-01 100.0% 76.2%
4929129 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 52.0 5.25e-01 93.2% 85.0%
3901969 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 51.0 5.05e-01 100.0% 80.0%
3919967 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.66 51.0 5.16e-01 100.0% 86.7%
5049207 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 55.0 5.39e-01 98.3% 92.3%
4374802 639.2.1.2 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › DUF2767 0.65 46.0 4.54e-01 76.3% 84.6%
5070931 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 51.0 5.45e-01 91.5% 100.0%
3723084 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.65 52.0 5.05e-01 94.9% 87.1%
3261028 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.64 52.0 4.63e-01 94.9% 63.5%
3696367 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.64 51.0 4.83e-01 93.2% 73.3%
3653854 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.64 50.0 4.72e-01 89.8% 73.3%
3613635 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.63 51.0 5.03e-01 91.5% 86.2%
5003619 4973.1.1.0 alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core 0.62 45.0 4.47e-01 93.2% 73.8%
5002376 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 51.0 4.32e-01 100.0% 54.3%
3943035 639.2.1.0 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) 0.61 50.0 4.90e-01 91.5% 81.5%
5074546 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 47.0 4.27e-01 96.6% 61.2%
4979742 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 47.0 4.32e-01 96.6% 65.0%
3328213 101.21.1.2 alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › Nucleolin_bd 0.58 43.0 4.49e-01 91.5% 98.0%
3965288 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 46.0 2.82e-01 89.8% 14.3%
4189431 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 44.0 4.50e-01 94.9% 94.5%
4955367 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 47.0 4.53e-01 96.6% 84.3%
3302030 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.56 42.0 4.28e-01 93.2% 86.7%
161716 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.55 38.0 3.87e-01 84.7% 74.6%
5022018 4973.1.1.0 alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core 0.55 42.0 4.07e-01 96.6% 72.9%
5055349 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.55 46.0 3.30e-01 100.0% 59.0%
3389032 5050.1.1.6 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › OATP 0.55 43.0 2.91e-01 93.2% 61.1%
4931927 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 45.0 3.97e-01 100.0% 69.5%
3598217 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.53 40.0 3.64e-01 89.8% 60.0%
5053286 247.1.1.0 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.52 40.0 2.65e-01 91.5% 18.9%
3499544 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.52 38.0 3.15e-01 96.6% 39.2%
3205239 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.50 36.0 3.48e-01 83.1% 80.0%
D2 medium residues 79-133
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5jajA03 1.20.1320.30 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › 0.83 59.0 4.51e-01 74.5% 41.4%
4uijA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.81 60.0 4.76e-01 78.2% 44.2%
3htmA02 6.10.250.3030 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.78 55.0 6.31e-01 78.2% 100.0%
2vkpB00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.76 57.0 4.43e-01 78.2% 72.5%
3iqcA00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.74 54.0 4.16e-01 78.2% 69.7%
3drxA02 6.10.140.750 Special › Helix non-globular › Helix Hairpins › 0.73 51.0 5.54e-01 74.5% 87.0%
3hnrA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 49.0 3.47e-01 94.5% 89.6%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3277346 4970.1.1.2 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_A 0.86 61.0 4.16e-01 74.5% 23.4%
3474497 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.82 57.0 4.35e-01 72.7% 71.7%
3224427 226.1.1.4 a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.82 59.0 4.70e-01 74.5% 45.0%
3848177 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.81 57.0 4.19e-01 72.7% 57.7%
4023973 226.1.1.4 a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.81 61.0 4.86e-01 80.0% 45.7%
3268416 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.81 59.0 4.57e-01 76.4% 73.6%
None 0.81 59.0 3.46e-01 76.4% 19.7%
3234840 226.1.1.4 a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.80 61.0 4.80e-01 80.0% 45.7%
3619409 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.80 56.0 4.26e-01 72.7% 66.1%
3586029 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.79 59.0 4.29e-01 78.2% 42.2%
3267440 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.78 56.0 4.17e-01 76.4% 35.6%
3269762 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.78 56.0 4.15e-01 76.4% 56.3%
3237637 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.77 54.0 4.43e-01 74.5% 76.0%
3398754 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.76 55.0 4.27e-01 76.4% 37.4%
3394708 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.75 54.0 3.99e-01 76.4% 56.4%
3383364 109.4.1.1257 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 0.75 55.0 3.67e-01 78.2% 25.2%
4874125 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.75 54.0 4.02e-01 76.4% 31.9%
3916410 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.75 54.0 3.95e-01 76.4% 69.0%
None 0.74 54.0 4.14e-01 78.2% 62.9%
3270557 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.73 53.0 4.07e-01 76.4% 65.0%
3213129 2006.1.3.11 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › TOP6A-Spo11_Toprim 0.70 53.0 3.66e-01 80.0% 46.3%
3427661 109.4.1.12 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Clathrin 0.69 51.0 3.90e-01 78.2% 38.4%