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MZ345003.1__UFZ21862.1__X__00040

Bact-Vir

MZ345003.1__UFZ21862.1__X__00040

Identity

Accession:
MZ345003 ↗
Kingdom:
phage

Quality

91.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Foxunavirus› Xanthomonas_phage_M29

TaxID: 2851082

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-70
PDB
Domain cluster: rep: MF668280.1__ASZ74799.1__SEA_PHABBA_262__00224__D26-84
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gr5A02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.58 38.0 3.75e-01 89.1% 61.8%
6cngA03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.56 44.0 3.59e-01 89.1% 95.3%
1j6wA00 3.30.1360.80 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › S-ribosylhomocysteinase (LuxS) 0.55 45.0 3.46e-01 95.3% 53.4%
3bm7A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 40.0 3.44e-01 85.9% 48.1%
3mahA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 34.0 3.38e-01 87.5% 60.0%
2kyyA00 3.30.950.30 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Schlafen, AAA domain 0.52 43.0 3.39e-01 96.9% 69.9%
4feuF01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 43.0 4.19e-01 93.8% 94.5%
2pulB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 42.0 3.83e-01 96.9% 88.0%
4fhdA02 3.80.30.30 Alpha Beta › Alpha-Beta Horseshoe › pyruvate-formate lyase- activating enzyme › 0.51 37.0 2.55e-01 76.6% 59.9%
5wnoA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 41.0 3.80e-01 95.3% 85.4%
4l68A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 42.0 3.65e-01 98.4% 97.3%
5xd6B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 42.0 3.77e-01 95.3% 76.6%
1oe4A00 3.40.470.10 Alpha Beta › 3-Layer(aba) Sandwich › Uracil-DNA Glycosylase, subunit E › Uracil-DNA glycosylase-like domain 0.51 38.0 2.65e-01 84.4% 71.4%
2g4bA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.50 39.0 3.52e-01 87.5% 63.4%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4998399 3646.1.1.1 ↗ alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › CbiQ 0.64 44.0 3.00e-01 71.9% 44.5%
3761812 3016.1.1.1 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 0.63 44.0 3.79e-01 98.4% 45.7%
4034536 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.62 40.0 3.86e-01 85.9% 57.3%
3936899 390.1.1.1 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.61 44.0 3.95e-01 93.8% 54.4%
4951603 3012.1.1.18 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › MCR_C 0.57 38.0 3.47e-01 70.3% 55.9%
3502632 206.1.1.72 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal 0.56 41.0 2.72e-01 81.2% 26.2%
3926963 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.53 38.0 3.28e-01 81.2% 50.8%
3594100 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.53 43.0 2.83e-01 93.8% 23.3%
3626802 2487.1.1.13 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Ncstrn_small 0.52 45.0 3.13e-01 98.4% 91.3%
3207383 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 42.0 2.89e-01 100.0% 45.7%
3321373 206.1.1.74 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.52 43.0 3.02e-01 95.3% 35.7%
3511068 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 42.0 2.87e-01 100.0% 47.3%
5046881 328.8.1.0 ↗ a+b two layers › IF3-like › Schlafen 8 › Schlafen 8 0.52 43.0 3.68e-01 96.9% 94.5%
3539349 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.52 42.0 3.00e-01 100.0% 51.2%
4028929 6127.1.1.1 ↗ beta meanders › Beta meander domain in PfEMP1 protein › Beta meander domain in PfEMP1 protein › Beta meander domain in PfEMP1 protein › CIDR1_gamma 0.51 34.0 3.07e-01 87.5% 48.9%
3300147 206.1.1.70 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.51 41.0 2.76e-01 92.2% 26.8%
3253426 2.1.1.28 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › mRNA_cap_C 0.51 34.0 2.84e-01 71.9% 65.6%
3211040 910.1.1.1 ↗ few secondary structure elements › Cysteine-rich DNA binding domain, (DM domain) › Cysteine-rich DNA binding domain, (DM domain) › Cysteine-rich DNA binding domain, (DM domain) › DM 0.51 34.0 3.35e-01 70.3% 74.3%