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MZ348425.1__QXV71578.1__psageB2_001__00001

Bact-Vir

MZ348425.1__QXV71578.1__psageB2_001__00001

Identity

Accession:
MZ348425 ↗
Kingdom:
phage

Quality

83.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_psageB2

TaxID: 2859562

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-75
PDB
Domain cluster: rep: OP712474.1__WBF76922.1__PSV3_00220__00021__D2-82
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF27119.1 best Phage_YdaY 65.4 5.70e-18 100.0% 65.0%
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6lo8F01 1.10.287.810 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains 0.70 46.0 4.69e-01 84.1% 68.1%
4g6dB02 6.10.140.1800 Special › Helix non-globular › Helix Hairpins › 0.69 50.0 4.78e-01 76.8% 81.5%
3aeiA00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 45.0 4.04e-01 100.0% 54.3%
4mk3A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.64 43.0 3.56e-01 84.1% 41.7%
4bqqB02 3.90.1750.20 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 0.64 37.0 2.73e-01 87.0% 21.1%
2l5aA00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.62 51.0 3.55e-01 89.9% 87.1%
2xgjA03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.59 49.0 3.41e-01 89.9% 53.0%
3mk7A00 1.20.210.10 Mainly Alpha › Up-down Bundle › Cytochrome C Oxidase; Chain A › Cytochrome c oxidase-like, subunit I domain 0.58 52.0 3.11e-01 97.1% 22.5%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.58 47.0 4.40e-01 85.5% 76.8%
2ix5A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.55 50.0 3.83e-01 100.0% 65.8%
7eqiA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.53 38.0 3.07e-01 81.2% 35.9%
1owlA02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 41.0 3.42e-01 85.5% 77.2%
3b02A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 31.0 2.90e-01 73.9% 45.9%
2zihC00 1.10.3630.10 Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like 0.52 41.0 2.81e-01 89.9% 83.2%
3floB00 1.10.3200.20 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › DNA Polymerase alpha, zinc finger 0.52 39.0 2.92e-01 85.5% 31.1%
2gz4A00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.52 47.0 3.33e-01 100.0% 82.5%
3s3lA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.51 37.0 2.96e-01 81.2% 39.0%
1hwyA02 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.50 38.0 2.95e-01 81.2% 43.6%
3rrkA02 1.20.1460.20 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › 0.50 41.0 3.24e-01 92.8% 82.6%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4508262 502.1.1.1 ↗ a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C 0.75 57.0 6.12e-01 79.7% 100.0%
4406227 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.73 41.0 3.27e-01 87.0% 30.4%
3942760 1079.1.1.8 ↗ alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › LysE 0.73 49.0 3.40e-01 79.7% 22.9%
3295074 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.67 55.0 4.35e-01 89.9% 47.1%
3708691 650.1.1.0 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.66 47.0 3.98e-01 82.6% 46.4%
3937187 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.66 46.0 3.86e-01 100.0% 45.5%
5029760 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.63 45.0 2.92e-01 75.4% 95.2%
4628387 616.1.1.1 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Ribosomal_S15 0.62 47.0 4.37e-01 79.7% 65.9%
3411883 604.1.1.63 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_SESTD1 0.62 46.0 3.79e-01 85.5% 45.0%
3808578 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.61 40.0 3.98e-01 98.6% 63.5%
5054860 3755.3.1.305 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Rad50_zn_hook 0.61 46.0 3.31e-01 85.5% 29.7%
1293726 150.7.1.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PE › PE › PE 0.59 48.0 4.41e-01 85.5% 74.1%
4628544 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.59 45.0 3.87e-01 85.5% 53.0%
4797762 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.58 40.0 4.25e-01 72.5% 79.0%
3248805 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.58 48.0 3.14e-01 91.3% 99.3%
3916642 192.2.1.56 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › KIF9 0.58 46.0 3.51e-01 84.1% 45.3%
3808845 5086.1.1.90 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › V_ATPase_I 0.58 51.0 3.92e-01 100.0% 44.0%
3692640 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.58 44.0 2.57e-01 87.0% 10.4%
4942997 2005.1.1.7 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.58 45.0 3.10e-01 89.9% 32.7%
3675304 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.57 47.0 3.82e-01 87.0% 71.7%
3290432 5086.1.1.184 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › DUF4407 0.57 45.0 3.93e-01 91.3% 58.0%
4073860 5086.1.1.67 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Neurensin 0.57 43.0 3.40e-01 79.7% 81.5%
3635933 5042.1.1.1 ↗ extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › CorA 0.56 38.0 3.72e-01 94.2% 64.0%
3988581 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.56 44.0 4.03e-01 84.1% 67.8%
3234976 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.56 45.0 3.79e-01 95.7% 53.6%
3622196 604.1.1.63 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_SESTD1 0.56 46.0 3.73e-01 87.0% 94.2%
5035493 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.56 45.0 3.85e-01 95.7% 56.2%
3605561 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.55 49.0 3.74e-01 100.0% 81.2%
3985490 192.2.1.5 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › DUF4376 0.55 46.0 3.76e-01 89.9% 74.2%
3959763 150.7.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PE › PE 0.55 45.0 4.03e-01 85.5% 92.2%
4021416 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.55 40.0 2.40e-01 78.3% 18.6%
5048091 2005.1.1.7 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.54 44.0 2.68e-01 88.4% 46.4%
3434561 101.1.6.36 ↗ alpha arrays › HTH › HTH › TrpR › PF28509 0.53 39.0 3.34e-01 82.6% 69.2%
3784780 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.53 42.0 3.71e-01 88.4% 73.3%
3601375 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 43.0 2.98e-01 91.3% 29.6%
3172462 375.10.1.1 ↗ few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DNA_Pol 0.50 39.0 3.36e-01 89.9% 50.0%