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MZ355721.1__QWK51374.1__SEA_STINSON_41__00040

Bact-Vir

MZ355721.1__QWK51374.1__SEA_STINSON_41__00040

Identity

Accession:
MZ355721 ↗
Kingdom:
phage

Quality

96.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-56
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05305.20 best DUF732 32.0 1.80e-07 100.0% 73.6%
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2q0iA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.86 74.0 4.55e-01 96.3% 20.3%
1u3dA03 1.10.579.10 Mainly Alpha › Orthogonal Bundle › DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3 › DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 0.79 67.0 4.61e-01 96.3% 30.0%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.76 66.0 5.46e-01 98.1% 70.1%
3ermB00 1.10.10.710 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like 0.74 49.0 4.66e-01 72.2% 57.8%
2lpnA00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.71 58.0 4.75e-01 94.4% 69.5%
3iuoA00 1.10.10.1390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ 0.70 57.0 4.54e-01 100.0% 45.0%
3er9B01 1.20.1270.320 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Poxvirus poly(A) polymerase, N domain 0.70 50.0 4.00e-01 75.9% 43.4%
1w36C06 1.10.10.990 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.69 58.0 5.41e-01 100.0% 79.2%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 54.0 4.81e-01 98.1% 61.5%
1i36A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.68 59.0 4.87e-01 100.0% 93.9%
7ccmB01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.68 58.0 4.34e-01 100.0% 51.0%
3mw6B00 1.10.1710.10 Mainly Alpha › Orthogonal Bundle › Fertility Inhibition Protein O; Chain: A; Domain 1 › ProQ/FinO domain 0.67 57.0 4.75e-01 96.3% 84.0%
1m70A02 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.67 57.0 4.66e-01 96.3% 83.8%
2iw3A02 1.20.1390.20 Mainly Alpha › Up-down Bundle › PWI domain › 0.66 54.0 4.67e-01 96.3% 88.9%
4muoA02 3.40.1030.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 0.63 44.0 2.88e-01 74.1% 86.1%
7dklA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 53.0 4.61e-01 100.0% 86.7%
2bbrA01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.63 45.0 3.83e-01 75.9% 67.4%
3gi7A00 1.20.1270.180 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.62 43.0 3.55e-01 74.1% 56.3%
4eqqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 48.0 4.96e-01 98.1% 100.0%
4fcgA00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.61 40.0 2.53e-01 100.0% 12.5%
1sg7A00 1.10.1740.70 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › ChaB 0.61 39.0 3.56e-01 75.9% 48.0%
4o8sA02 1.20.58.1790 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › JHP933, helical tail domain 0.60 53.0 4.24e-01 100.0% 89.7%
1nrwA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.60 43.0 3.32e-01 77.8% 36.9%
2h5nC00 1.10.3680.10 Mainly Alpha › Orthogonal Bundle › TerB-like › TerB-like 0.60 45.0 3.57e-01 87.0% 41.1%
1x4qA01 1.20.1390.10 Mainly Alpha › Up-down Bundle › PWI domain › PWI domain 0.59 49.0 4.61e-01 98.1% 85.9%
1mzbA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 49.0 4.38e-01 100.0% 67.1%
3b0pA02 1.20.120.1460 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.59 45.0 4.14e-01 87.0% 72.0%
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.59 40.0 3.54e-01 72.2% 47.6%
3qitB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 51.0 3.24e-01 100.0% 47.7%
3p2mA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 48.0 3.07e-01 96.3% 53.7%
1lxlA00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.58 49.0 3.33e-01 100.0% 28.1%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 45.0 4.06e-01 88.9% 92.3%
3h5qA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.57 45.0 4.11e-01 96.3% 65.7%
4akgA13 1.10.8.740 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.57 38.0 3.38e-01 70.4% 44.7%
5svlA01 1.10.287.940 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel 0.57 39.0 3.71e-01 74.1% 63.2%
4g1tA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 39.0 3.81e-01 100.0% 63.9%
2xzmV01 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.57 47.0 4.61e-01 100.0% 91.8%
2o5iN07 1.10.132.30 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain 0.56 43.0 3.45e-01 87.0% 88.8%
4nooB00 1.10.8.1160 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.56 38.0 3.25e-01 72.2% 44.2%
2riqA01 1.10.20.130 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › 0.55 40.0 3.85e-01 85.2% 68.2%
3ugvA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 43.0 3.48e-01 100.0% 43.7%
4c2uA02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.54 43.0 3.93e-01 100.0% 81.5%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.54 40.0 3.71e-01 85.2% 80.0%
4ixjA01 3.30.1300.80 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.53 45.0 4.01e-01 94.4% 76.6%
2p1aB01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.53 42.0 3.14e-01 90.7% 65.1%
1gt0D00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.52 37.0 3.35e-01 77.8% 87.3%
2yqzA02 1.10.8.900 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.52 41.0 3.91e-01 92.6% 80.9%
4ui9Y03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 39.0 3.53e-01 87.0% 87.5%
3f2kB00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.50 40.0 2.92e-01 96.3% 98.4%
2lbfB01 1.10.10.1410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.50 37.0 3.59e-01 90.7% 73.9%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3955500 101.1.2.655 alpha arrays › HTH › HTH › winged helix domain › DUF732 0.92 83.0 7.22e-01 100.0% 67.9%
4028279 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.82 62.0 4.81e-01 94.4% 38.3%
4182238 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.82 62.0 5.30e-01 94.4% 51.8%
4942265 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 67.0 5.84e-01 96.3% 64.7%
5022532 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 60.0 5.37e-01 83.3% 72.0%
3742738 4964.1.1.0 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.74 64.0 4.92e-01 98.1% 72.0%
4506746 4964.1.1.0 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.73 63.0 4.33e-01 98.1% 66.8%
4499345 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 59.0 6.13e-01 96.3% 98.0%
4942943 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.72 61.0 4.94e-01 98.1% 63.6%
4019040 4964.1.1.0 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.72 61.0 4.37e-01 98.1% 49.4%
4336911 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 59.0 5.52e-01 100.0% 72.9%
3672635 101.1.1.295 alpha arrays › HTH › HTH › Three-helical HTH › HTH_70 0.71 60.0 5.53e-01 100.0% 73.3%
2882127 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 57.0 5.21e-01 94.4% 66.7%
4438504 7000.1.1.0 alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.70 56.0 5.38e-01 100.0% 76.9%
3279199 3721.1.1.1 alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › VIT1 0.69 49.0 4.47e-01 74.1% 64.3%
3711570 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 59.0 4.20e-01 100.0% 64.1%
3940641 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.68 55.0 5.25e-01 100.0% 76.9%
3567178 198.1.1.10 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2, SapB_1, Saposin 0.67 54.0 4.91e-01 96.3% 80.0%
3337658 610.3.1.3 alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › tRNA_synt_1c_R1 0.67 55.0 3.89e-01 94.4% 30.3%
3897956 198.1.1.18 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapA, SapB_2, SapB_1, Saposin 0.67 57.0 4.49e-01 96.3% 54.8%
3970076 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 53.0 5.49e-01 98.1% 100.0%
4978129 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.67 55.0 3.33e-01 98.1% 16.1%
1566530 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.65 56.0 4.95e-01 100.0% 81.5%
4028411 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 54.0 5.13e-01 96.3% 95.4%
3979957 1.1.9.50 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF28530 0.65 56.0 4.12e-01 100.0% 44.0%
4271175 101.1.2.498 alpha arrays › HTH › HTH › winged helix domain › PF25870 0.65 53.0 4.08e-01 96.3% 38.5%
3573598 101.1.2.154 alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.65 54.0 4.43e-01 100.0% 54.5%
3590551 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.65 53.0 5.47e-01 94.4% 100.0%
3862340 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.64 52.0 4.78e-01 94.4% 84.0%
3781503 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.64 50.0 5.07e-01 96.3% 90.9%
4207615 170.2.1.28 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › PNMA 0.63 49.0 4.65e-01 87.0% 81.5%
3901969 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 49.0 4.71e-01 94.4% 75.4%
3504540 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.63 51.0 5.11e-01 100.0% 94.5%
3273958 198.1.1.10 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2, SapB_1, Saposin 0.63 51.0 4.56e-01 100.0% 74.1%
4236554 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.62 52.0 5.08e-01 100.0% 88.3%
3262552 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.61 49.0 4.56e-01 100.0% 78.7%
3261028 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.60 48.0 4.34e-01 100.0% 71.8%
3248091 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.60 48.0 4.33e-01 100.0% 74.1%
3919967 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.59 47.0 4.59e-01 88.9% 85.0%
1169399 101.35.1.2 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Lipoprotein_Ltp 0.59 47.0 4.78e-01 98.1% 94.2%
4464648 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.59 49.0 4.66e-01 96.3% 78.5%
3870636 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 45.0 4.26e-01 83.3% 78.5%
5025960 101.1.1.558 alpha arrays › HTH › HTH › Three-helical HTH › DUF7523 0.57 47.0 4.71e-01 96.3% 100.0%
3196401 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.57 46.0 4.61e-01 100.0% 94.5%
3983493 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.57 44.0 4.50e-01 98.1% 100.0%
3261856 101.1.1.50 alpha arrays › HTH › HTH › Three-helical HTH › Nop16 0.57 46.0 4.41e-01 96.3% 90.8%
3897972 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.56 45.0 4.24e-01 100.0% 77.3%
3736802 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.56 46.0 4.51e-01 98.1% 91.7%
3871809 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.55 41.0 3.63e-01 83.3% 65.9%
3661711 592.1.1.1 alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI 0.55 45.0 4.12e-01 100.0% 67.5%