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MZ355727.1__QWS69725.1__SEA_WILLIAMSTRONG_59__00059
Bact-VirMZ355727.1__QWS69725.1__SEA_WILLIAMSTRONG_59__00059
Identity
- Accession:
- MZ355727 ↗
- Kingdom:
- phage
Quality
89.1
mean pLDDT
Taxonomy
TaxID: 2844394
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-81
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ld4A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.67 | 54.0 | 4.14e-01 | 100.0% | 40.1% |
| 2okqB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 50.0 | 4.41e-01 | 100.0% | 60.2% |
| 3nycA02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.61 | 42.0 | 3.46e-01 | 96.2% | 38.7% |
| 1ohgA01 | 3.30.2400.10 | Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › Major capsid protein gp5 | 0.61 | 53.0 | 4.42e-01 | 100.0% | 61.6% |
| 6gbsA02 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.60 | 47.0 | 3.49e-01 | 100.0% | 32.1% |
| 1unnC00 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.60 | 54.0 | 4.86e-01 | 100.0% | 88.3% |
| 3eeeA00 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.60 | 38.0 | 3.00e-01 | 100.0% | 27.7% |
| 1pj5A02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.59 | 42.0 | 3.25e-01 | 96.2% | 33.1% |
| 1dt4A00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.59 | 42.0 | 4.38e-01 | 100.0% | 80.8% |
| 2lu1A00 | 3.30.70.2370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 43.0 | 4.19e-01 | 100.0% | 69.7% |
| 4rhaA00 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.58 | 51.0 | 4.35e-01 | 98.8% | 61.8% |
| 2q0yA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.58 | 42.0 | 3.49e-01 | 76.2% | 82.6% |
| 2axyA00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.57 | 38.0 | 3.97e-01 | 100.0% | 75.0% |
| 4krgA02 | 3.40.50.12180 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 44.0 | 3.29e-01 | 100.0% | 32.7% |
| 1we8A01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.57 | 40.0 | 3.95e-01 | 100.0% | 69.0% |
| 4osnA00 | 2.30.29.100 | Mainly Beta › Roll › PH-domain like › | 0.56 | 50.0 | 4.55e-01 | 100.0% | 92.7% |
| 2jzxA02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.56 | 39.0 | 3.93e-01 | 100.0% | 72.2% |
| 1omsA00 | 3.30.70.1050 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain | 0.55 | 48.0 | 4.33e-01 | 100.0% | 85.1% |
| 2n8lA00 | 3.30.310.210 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.55 | 38.0 | 2.89e-01 | 100.0% | 30.4% |
| 1vk3A02 | 3.30.1330.10 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain | 0.54 | 48.0 | 4.07e-01 | 100.0% | 68.1% |
| 7qh2C03 | 3.30.70.2740 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 35.0 | 3.54e-01 | 100.0% | 67.9% |
| 5xukA00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.52 | 46.0 | 4.10e-01 | 100.0% | 99.1% |
| 2htdB00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 44.0 | 3.90e-01 | 100.0% | 90.3% |
| 1l0oA00 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.51 | 38.0 | 3.20e-01 | 80.0% | 71.6% |
| 3n5fA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 42.0 | 3.77e-01 | 100.0% | 64.0% |
| 1i3pA00 | 2.60.250.10 | Mainly Beta › Sandwich › Baculovirus p35 › Baculovirus p35 | 0.51 | 45.0 | 3.12e-01 | 100.0% | 51.8% |
| 1azsA00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.50 | 45.0 | 3.38e-01 | 98.8% | 65.3% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3482573 | 872.3.1.0 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like | 0.72 | 57.0 | 5.46e-01 | 100.0% | 74.4% |
| 3588078 | 872.3.1.0 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like | 0.72 | 58.0 | 5.56e-01 | 100.0% | 76.7% |
| 3786888 | 312.1.1.7 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › ATP_transf | 0.72 | 51.0 | 4.04e-01 | 98.8% | 36.9% |
| 5004176 | 256.1.1.0 ↗ | a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like | 0.71 | 45.0 | 5.23e-01 | 100.0% | 92.7% |
| 3436180 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.70 | 46.0 | 4.89e-01 | 100.0% | 77.1% |
| 3931565 | 304.20.1.1 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP_RNA-bind | 0.68 | 58.0 | 4.87e-01 | 100.0% | 55.0% |
| 3704046 | 304.55.2.0 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like | 0.68 | 50.0 | 4.80e-01 | 100.0% | 67.4% |
| 3724442 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.67 | 44.0 | 4.72e-01 | 100.0% | 77.1% |
| 3275694 | 872.3.1.6 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_3 | 0.66 | 51.0 | 4.79e-01 | 100.0% | 68.0% |
| 3796322 | 304.109.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e | 0.66 | 54.0 | 4.82e-01 | 100.0% | 63.5% |
| 3634764 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.64 | 58.0 | 5.27e-01 | 100.0% | 94.3% |
| 5029745 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.64 | 54.0 | 5.40e-01 | 100.0% | 95.0% |
| 4522746 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.63 | 44.0 | 3.58e-01 | 100.0% | 37.4% |
| 2723970 | 302.4.1.0 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit | 0.63 | 57.0 | 4.98e-01 | 100.0% | 95.0% |
| 3867900 | 304.47.1.0 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain | 0.63 | 54.0 | 4.13e-01 | 100.0% | 40.5% |
| 3996241 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.62 | 55.0 | 4.58e-01 | 100.0% | 68.6% |
| 4246133 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.61 | 55.0 | 5.17e-01 | 100.0% | 83.2% |
| 3702711 | 872.1.1.0 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like | 0.61 | 54.0 | 5.21e-01 | 100.0% | 94.4% |
| 3921499 | 304.47.1.0 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain | 0.61 | 53.0 | 4.56e-01 | 100.0% | 61.5% |
| 3902599 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.60 | 53.0 | 5.01e-01 | 98.8% | 98.9% |
| 5051558 | 301.2.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS | 0.59 | 52.0 | 4.11e-01 | 100.0% | 67.6% |
| 5073065 | 812.1.1.0 ↗ | a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain | 0.58 | 41.0 | 4.45e-01 | 100.0% | 92.3% |
| 3948985 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.58 | 51.0 | 4.81e-01 | 100.0% | 91.0% |
| 3609669 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.58 | 50.0 | 3.81e-01 | 100.0% | 66.3% |
| 3711302 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.58 | 51.0 | 4.26e-01 | 100.0% | 66.4% |
| 5055225 | 304.12.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 | 0.58 | 48.0 | 4.90e-01 | 100.0% | 96.2% |
| 3184299 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.58 | 49.0 | 4.19e-01 | 100.0% | 58.5% |
| 3626218 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.58 | 41.0 | 3.31e-01 | 97.5% | 37.5% |
| 3285209 | 306.2.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor | 0.58 | 40.0 | 4.15e-01 | 96.2% | 79.5% |
| None | — | 0.56 | 41.0 | 3.28e-01 | 77.5% | 66.9% | |
| 3925482 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.56 | 41.0 | 2.66e-01 | 80.0% | 26.8% |
| 3735065 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.56 | 49.0 | 3.15e-01 | 100.0% | 37.0% |
| 3667681 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.55 | 40.0 | 3.95e-01 | 100.0% | 71.8% |
| 4039569 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.55 | 48.0 | 4.22e-01 | 100.0% | 85.8% |
| 4586546 | 259.1.1.2 ↗ | a+b two layers › Ribosomal protein L31e-like › Ribosomal protein L31e/gp120 outer domain › Ribosomal protein L31e/gp120 outer domain › Ribosomal_L31e | 0.54 | 44.0 | 4.22e-01 | 100.0% | 77.8% |
| 3755164 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.54 | 36.0 | 3.73e-01 | 100.0% | 73.3% |
| 3781530 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.53 | 38.0 | 3.72e-01 | 100.0% | 67.8% |
| 3704783 | 304.20.1.1 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP_RNA-bind | 0.53 | 46.0 | 3.81e-01 | 100.0% | 57.3% |
| None | — | 0.52 | 37.0 | 2.86e-01 | 76.2% | 97.4% | |
| 4024834 | 304.51.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related | 0.52 | 45.0 | 3.83e-01 | 100.0% | 79.3% |
| 3973644 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.52 | 43.0 | 3.84e-01 | 100.0% | 62.5% |
| 3724818 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.51 | 42.0 | 3.08e-01 | 92.5% | 57.0% |