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MZ357096.1__QXJ40727.1__X__00014

Bact-Vir

MZ357096.1__QXJ40727.1__X__00014

Identity

Accession:
MZ357096 ↗
Kingdom:
phage

Quality

91.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Curtobacterium_phage_Parvaparticeps

TaxID: 2851086

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-31
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gsoA01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.80 70.0 4.00e-01 100.0% 21.1%
2b5uA02 1.10.287.620 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins 0.69 54.0 3.55e-01 100.0% 57.1%
3mvpA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 55.0 4.98e-01 100.0% 80.9%
5n13A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.67 48.0 3.64e-01 100.0% 50.0%
2yevA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 48.0 4.02e-01 100.0% 47.3%
1m6yA02 1.10.150.170 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative methyltransferase TM0872, insert domain 0.66 47.0 3.37e-01 90.3% 23.8%
1wleA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.65 51.0 3.63e-01 100.0% 28.9%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.65 47.0 3.86e-01 96.8% 41.3%
3f0cA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 49.0 4.51e-01 100.0% 77.6%
3beeA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.63 46.0 3.58e-01 100.0% 36.3%
1wpaA01 6.10.140.340 Special › Helix non-globular › Helix Hairpins › 0.60 43.0 3.39e-01 100.0% 32.3%
2c5qA00 3.50.30.40 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Ribonuclease E inhibitor RraA/RraA-like 0.60 48.0 2.91e-01 100.0% 74.6%
2qqpD00 6.10.140.650 Special › Helix non-globular › Helix Hairpins › 0.58 42.0 4.10e-01 93.5% 72.5%
3t38A01 1.10.8.1060 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Corynebacterium glutamicum thioredoxin-dependent arsenate reductase, N-terminal domain 0.58 44.0 3.56e-01 93.5% 40.8%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.57 41.0 3.15e-01 100.0% 62.4%
4evxA00 1.10.1740.240 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.57 43.0 3.15e-01 90.3% 50.5%
2nobA03 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.54 45.0 3.04e-01 96.8% 80.2%
2jdcA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 41.0 2.78e-01 100.0% 51.0%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3279558 192.31.1.5 ↗ alpha bundles › Long alpha-hairpin › CP12 › CP12 › DUF4254 0.84 70.0 4.83e-01 100.0% 80.0%
3727276 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.82 68.0 4.96e-01 100.0% 36.0%
4034363 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.80 64.0 4.49e-01 100.0% 29.1%
3705516 604.7.1.0 ↗ alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A 0.77 60.0 4.17e-01 100.0% 29.2%
3477822 1147.1.1.1 ↗ alpha bundles › RNA polymerase II elongation factor ELL2 C-terminal domain › RNA polymerase II elongation factor ELL2 C-terminal domain › RNA polymerase II elongation factor ELL2 C-terminal domain › Occludin_ELL 0.75 58.0 4.00e-01 100.0% 28.0%
4975294 601.28.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.67 49.0 3.87e-01 100.0% 56.7%
3597099 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.67 52.0 3.48e-01 100.0% 20.7%
3196924 389.1.1.134 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › DUF7707 0.66 49.0 3.86e-01 100.0% 36.5%
3730259 509.1.1.1 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.66 48.0 4.12e-01 96.8% 47.7%
3441991 632.21.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Helical bundle domain in endo-beta-N-acetylglucosaminidase F2 › Helical bundle domain in endo-beta-N-acetylglucosaminidase F2 0.66 50.0 4.23e-01 100.0% 49.2%
3282674 371.1.1.3 ↗ few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholip_A2_3 0.66 50.0 3.77e-01 100.0% 57.0%
3392896 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.63 46.0 3.72e-01 100.0% 38.8%
4962646 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.62 49.0 4.27e-01 90.3% 58.0%
3538243 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.61 46.0 3.75e-01 100.0% 41.2%
3248074 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.61 45.0 3.09e-01 100.0% 22.6%
3886521 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 46.0 3.03e-01 100.0% 39.4%
4930093 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.60 46.0 4.06e-01 87.1% 56.0%
3740646 1128.1.1.0 ↗ alpha bundles › LYR protein › LYR protein › LYR protein 0.60 45.0 3.67e-01 100.0% 41.2%
3238645 2498.1.1.53 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M13 0.60 48.0 2.75e-01 96.8% 7.9%
3451236 397.4.1.3 ↗ few secondary structure elements › Toxic hairpin › VhTI-like › VhTI-like › PF31266 0.58 46.0 4.24e-01 96.8% 66.7%