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MZ369152.1__QYW02840.1__X__00030

Bact-Vir

MZ369152.1__QYW02840.1__X__00030

Identity

Accession:
MZ369152 ↗
Kingdom:
phage

Quality

76.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_BUCT006

TaxID: 2851083

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 46-149
PDB
Domain cluster: rep: KR296690.1__AKJ73981.1__SP36_9__00009__D1-79
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF16677.12 best GP3_package 36.8 4.80e-09 100.0% 74.8%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3p9aF00 1.10.132.80 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.90 79.0 7.12e-01 100.0% 70.9%
3f41A01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.62 41.0 2.97e-01 90.4% 24.0%
4f98A00 2.30.140.50 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Protein of unknown function DUF2790 0.59 21.0 2.68e-01 79.8% 46.8%
3cjlA00 3.10.20.850 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function DUF3861 0.57 29.0 3.14e-01 74.0% 54.5%
1fm2B03 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.56 29.0 3.55e-01 87.5% 78.8%
2q3fA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 37.0 3.08e-01 100.0% 39.7%
4wksC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.55 31.0 3.64e-01 96.2% 78.7%
6nvxB02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.53 30.0 3.43e-01 93.3% 75.3%
4yfbC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.50 30.0 3.42e-01 97.1% 79.5%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1247620 101.1.1.72 ↗ alpha arrays › HTH › HTH › Three-helical HTH › GP3_package 0.90 79.0 7.00e-01 100.0% 68.3%
3561667 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 48.0 3.18e-01 84.6% 52.3%
3522563 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.60 25.0 3.73e-01 95.2% 97.5%
3705042 230.5.1.2 ↗ a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › MVP_shoulder 0.60 29.0 3.20e-01 82.7% 54.1%
2718723 228.1.1.1 ↗ a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Sod_Fe_C 0.58 22.0 2.63e-01 84.6% 44.4%
185111 3554.1.1.1 ↗ a+b duplicates or obligate multimers › protein of unknown function (eca1910) › protein of unknown function (eca1910) › protein of unknown function (eca1910) › DUF3861 0.58 29.0 3.19e-01 74.0% 55.2%
3487368 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.57 27.0 3.32e-01 81.7% 70.8%
3224634 5001.1.1.41 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.56 45.0 3.14e-01 88.5% 59.2%
3786528 109.4.1.87 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec6 0.56 49.0 2.95e-01 100.0% 23.0%
3838659 5085.1.1.0 ↗ a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.56 44.0 2.98e-01 85.6% 48.8%
3907024 260.1.1.1 ↗ a+b duplicates or obligate multimers › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › Plectin 0.55 40.0 2.80e-01 75.0% 47.2%
1031169 3709.1.1.1 ↗ a+b two layers › ESX-1 secretion system protein eccB1 linker domains › ESX-1 secretion system protein eccB1 linker domains › ESX-1 secretion system protein eccB1 linker domains › T7SS_ESX1_EccB 0.55 22.0 3.18e-01 86.5% 83.7%
3682673 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 48.0 2.95e-01 99.0% 25.5%
3479321 5001.1.1.41 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.54 41.0 2.84e-01 82.7% 40.8%
4272772 3281.1.1.3 ↗ alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M,Proton_antipo_N,Proton_antipo_C 0.54 48.0 2.92e-01 100.0% 23.4%
3875765 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.53 45.0 3.17e-01 92.3% 67.9%
3257563 101.1.1.76 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.52 35.0 3.64e-01 92.3% 74.7%
1828346 1063.1.1.1 ↗ alpha complex topology › Tegument protein U14 › Tegument protein U14 › Tegument protein U14 › Herpes_pp85 0.52 44.0 2.91e-01 93.3% 56.7%
3620592 6155.1.1.15 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › DUF846 0.51 46.0 4.18e-01 100.0% 85.7%
1180647 205.1.1.35 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4+Fer4_7 0.51 27.0 3.05e-01 98.1% 64.5%
4399128 7581.1.1.30 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N, ketoacyl-synt, Thiolase_C 0.51 43.0 3.01e-01 95.2% 55.9%
3194847 3343.1.1.2 ↗ alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal 0.51 42.0 2.64e-01 93.3% 20.0%
3218266 5001.1.1.41 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.51 42.0 2.95e-01 91.3% 63.7%
3914722 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 24.0 2.73e-01 90.4% 56.0%