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MZ375356.1__QZB89748.1__T4583L_132__00099

Bact-Vir

MZ375356.1__QZB89748.1__T4583L_132__00099

Identity

Accession:
MZ375356 ↗
Kingdom:
phage

Quality

76.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Tequatrovirus› Escherichia_phage_T4

TaxID: 2681598

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-53
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gr5C01 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.72 50.0 4.68e-01 71.7% 87.5%
2pstX00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.67 51.0 4.89e-01 81.1% 88.5%
2wcyA01 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.61 42.0 3.74e-01 71.7% 53.3%
3ihpA03 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 48.0 2.94e-01 86.8% 70.4%
8h68A01 2.60.120.590 Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.60 41.0 2.70e-01 71.7% 18.6%
1zc1A01 2.40.40.50 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › Ubiquitin fusion degradation protein UFD1, N-terminal domain 0.56 38.0 3.08e-01 71.7% 51.5%
3b5mA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 38.0 3.04e-01 75.5% 56.3%
1g2rA00 3.30.1230.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like 0.55 39.0 3.33e-01 79.2% 57.4%
4dohE02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 38.0 3.09e-01 75.5% 39.6%
1bikA00 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.52 37.0 2.93e-01 75.5% 38.2%
2dulA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 40.0 2.57e-01 90.6% 73.7%
4chkB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 35.0 3.04e-01 71.7% 46.2%
1aalB00 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.51 36.0 3.59e-01 75.5% 73.7%
3cp2A02 2.40.30.260 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.51 37.0 3.14e-01 79.2% 59.6%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 37.0 2.87e-01 86.8% 54.5%
2hg6A00 3.90.1650.10 Alpha Beta › Alpha-Beta Complex › PA1123-like › PA1123-like 0.50 36.0 3.07e-01 90.6% 41.5%
4o1nD01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.50 34.0 2.83e-01 73.6% 84.3%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3960403 4076.2.1.0 ↗ a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like 0.75 51.0 4.77e-01 71.7% 86.2%
2172423 3529.1.1.4 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault_4 0.71 47.0 4.81e-01 71.7% 72.0%
3593793 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.70 46.0 4.78e-01 73.6% 72.0%
1518911 4076.2.1.1 ↗ a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › MbtH 0.70 50.0 4.34e-01 75.5% 68.8%
3600630 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.68 46.0 4.08e-01 73.6% 49.3%
5027909 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 49.0 4.69e-01 75.5% 66.7%
4999007 2002.4.1.2 ↗ a/b barrels › TIM beta/alpha-barrel › Nicotinate/Quinolinate PRTase C-terminal domain-like › Nicotinate/Quinolinate PRTase C-terminal domain-like › QRPTase_C 0.68 51.0 3.24e-01 83.0% 26.9%
4853186 2002.1.1.128 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › NAPRTase 0.66 50.0 3.09e-01 81.1% 21.7%
3889285 355.1.1.6 ↗ few secondary structure elements › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › MGC-24 0.66 47.0 4.64e-01 79.2% 72.7%
4980022 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 46.0 4.79e-01 75.5% 98.0%
148141 4076.2.1.1 ↗ a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › MbtH 0.65 47.0 4.24e-01 77.4% 66.2%
1175478 4076.2.1.1 ↗ a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › MbtH 0.64 50.0 4.54e-01 83.0% 69.4%
5078363 2003.1.5.19 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM 0.63 52.0 3.19e-01 100.0% 72.8%
4017999 2003.1.2.29 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 0.61 49.0 2.88e-01 92.5% 70.8%
4940302 2003.1.5.19 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM 0.60 49.0 3.04e-01 100.0% 77.0%
3512272 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 42.0 3.76e-01 73.6% 62.7%
3261599 4272.1.1.1 ↗ a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.59 40.0 2.72e-01 71.7% 56.9%
4474017 217.1.1.2 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 0.57 44.0 3.01e-01 83.0% 52.6%
3185712 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 38.0 2.95e-01 73.6% 48.0%
4947623 268.1.1.0 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related 0.55 38.0 3.10e-01 73.6% 74.0%
4283995 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 37.0 2.70e-01 71.7% 42.4%
3218809 384.1.1.1 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI 0.54 39.0 3.39e-01 75.5% 53.8%
4504924 301.9.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA 0.53 40.0 3.33e-01 90.6% 70.8%
5068815 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 37.0 3.11e-01 77.4% 48.4%
3501914 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.52 35.0 3.08e-01 71.7% 47.1%
3538582 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.51 38.0 2.80e-01 88.7% 72.2%
5069372 11.1.1.103 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.51 35.0 2.80e-01 71.7% 83.5%
3992780 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 36.0 2.30e-01 75.5% 15.8%