Back to structures

MZ398244.1__QYC97019.1__X__00021

Bact-Vir

MZ398244.1__QYC97019.1__X__00021

Identity

Accession:
MZ398244 ↗
Kingdom:
phage

Quality

96.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-89
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14743.13 best DNA_ligase_OB_2 48.7 8.40e-13 87.5% 95.5%
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6rarI02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.80 75.0 7.55e-01 100.0% 100.0%
2wfwB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.80 53.0 6.00e-01 100.0% 89.6%
1a0iA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.79 72.0 6.91e-01 100.0% 97.0%
2rcnA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.78 49.0 5.79e-01 100.0% 91.8%
2q2tA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.78 72.0 6.76e-01 100.0% 96.2%
2hivA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.77 71.0 5.83e-01 100.0% 79.7%
2cfmA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.76 71.0 5.96e-01 100.0% 75.7%
6p0cA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.76 69.0 5.80e-01 100.0% 84.4%
3l2pA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.75 70.0 6.24e-01 100.0% 80.8%
4dapA01 2.40.50.580 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.73 53.0 5.54e-01 100.0% 82.5%
4gnxA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 48.0 4.47e-01 100.0% 56.5%
3d0fA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 53.0 5.75e-01 100.0% 97.3%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.67 45.0 5.09e-01 87.5% 91.0%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.67 40.0 4.76e-01 98.9% 91.4%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 36.0 4.29e-01 76.1% 82.1%
2l55A00 2.40.50.320 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Copper binding periplasmic protein CusF 0.65 49.0 5.08e-01 100.0% 85.4%
2vnuD02 2.40.50.700 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 48.0 5.09e-01 98.9% 89.6%
1dgsA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 49.0 5.37e-01 98.9% 98.6%
2vqeL00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 52.0 4.62e-01 100.0% 62.1%
6ipaA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 55.0 4.42e-01 100.0% 50.3%
1g29103 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.62 38.0 4.27e-01 97.7% 83.1%
2wacA01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 47.0 4.17e-01 100.0% 57.1%
3bdlA03 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 48.0 4.27e-01 100.0% 60.0%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 30.0 3.43e-01 100.0% 62.9%
1pxfA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 52.0 4.86e-01 100.0% 75.7%
2id0A04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 51.0 5.19e-01 100.0% 95.4%
4pmwA02 2.40.50.700 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 45.0 4.74e-01 100.0% 92.3%
3oyyB03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 38.0 4.47e-01 98.9% 100.0%
6jy5B00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.59 48.0 4.96e-01 98.9% 91.5%
4geqB00 3.30.160.430 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 28.0 3.36e-01 90.9% 67.2%
4dovA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.57 41.0 3.45e-01 76.1% 77.7%
1h6hA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 48.0 4.09e-01 92.0% 81.8%
1b44D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 49.0 4.62e-01 100.0% 81.1%
3bdlA01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 50.0 4.09e-01 100.0% 62.7%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.55 44.0 3.54e-01 86.4% 73.4%
1x05A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 37.0 3.30e-01 75.0% 48.1%
3ddmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 44.0 3.93e-01 88.6% 90.4%
3e1tA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 37.0 2.70e-01 72.7% 31.3%
3teeA02 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.53 31.0 3.36e-01 88.6% 67.1%
4jn7A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 42.0 3.88e-01 88.6% 85.7%
3cymA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 37.0 2.85e-01 73.9% 44.0%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3605540 2.1.1.65 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB_2 0.91 78.0 7.86e-01 97.7% 89.8%
3598808 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.90 81.0 7.86e-01 100.0% 87.4%
3386087 2.1.1.65 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB_2 0.88 72.0 7.55e-01 100.0% 95.0%
1406655 2.1.1.65 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB_2 0.85 70.0 7.30e-01 100.0% 93.8%
3944434 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.83 75.0 7.34e-01 98.9% 88.4%
4581600 2.1.1.70 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C 0.80 51.0 4.21e-01 100.0% 38.0%
3610035 2.1.1.70 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C 0.80 51.0 4.56e-01 100.0% 47.5%
3603885 2.1.1.70 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C 0.80 51.0 4.20e-01 100.0% 38.0%
2559784 2.1.1.65 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB_2 0.80 75.0 7.36e-01 100.0% 94.7%
4994758 2.1.1.70 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C 0.80 51.0 4.70e-01 100.0% 51.8%
365199 2.1.1.70 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C 0.79 50.0 5.39e-01 100.0% 74.0%
372 2.1.1.91 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_C 0.79 72.0 6.91e-01 100.0% 97.0%
3197681 2.1.1.31 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_A_C 0.78 72.0 5.63e-01 100.0% 74.7%
3993946 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.78 36.0 5.09e-01 96.6% 97.5%
3602009 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.77 49.0 4.28e-01 100.0% 43.8%
3960613 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.77 71.0 6.01e-01 100.0% 75.7%
4979365 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.77 72.0 5.97e-01 100.0% 85.5%
3639172 2.1.1.31 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_A_C 0.77 71.0 5.78e-01 100.0% 80.0%
3789669 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.77 71.0 5.73e-01 100.0% 78.1%
4455042 2.1.1.31 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_A_C 0.77 70.0 5.96e-01 100.0% 73.6%
3393802 2.1.1.31 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_A_C 0.77 71.0 5.65e-01 100.0% 75.2%
3598978 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.76 70.0 5.70e-01 100.0% 76.9%
4068863 2.1.1.31 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_A_C 0.76 70.0 6.04e-01 100.0% 77.8%
4945407 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.76 70.0 5.76e-01 100.0% 82.7%
4670455 2.1.1.31 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_A_C 0.76 70.0 5.89e-01 100.0% 75.7%
4350108 2.1.1.31 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_A_C 0.76 70.0 5.63e-01 100.0% 76.9%
5036053 2.1.1.31 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_A_C 0.75 70.0 6.05e-01 100.0% 84.6%
4206425 2.1.1.48 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Elong-fact-P_C 0.75 48.0 5.71e-01 98.9% 96.6%
4947308 2.1.1.31 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_A_C 0.75 69.0 5.76e-01 100.0% 86.2%
4992393 2.1.1.31 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_A_C 0.74 67.0 5.93e-01 100.0% 84.4%
3612950 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 67.0 6.05e-01 100.0% 96.7%
4509258 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.73 66.0 5.25e-01 98.9% 85.3%
4291923 2.1.1.31 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_A_C 0.72 66.0 5.50e-01 100.0% 81.3%
3730279 2.1.1.31 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_A_C 0.72 65.0 5.19e-01 100.0% 74.9%
3382836 2.1.1.31 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_A_C 0.72 65.0 5.37e-01 100.0% 81.9%
4672063 2.1.1.48 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Elong-fact-P_C 0.71 45.0 5.36e-01 97.7% 96.6%
3969377 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 50.0 5.45e-01 100.0% 87.8%
3282644 2.24.1.2 beta barrels › OB-fold › probable receptor YhhM › probable receptor YhhM › DUF7489 0.69 47.0 5.40e-01 100.0% 95.4%
4139699 2.1.1.48 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Elong-fact-P_C 0.69 44.0 5.25e-01 100.0% 96.7%
3945163 2.1.1.48 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Elong-fact-P_C 0.69 44.0 5.27e-01 100.0% 96.7%
4332591 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.68 56.0 5.72e-01 100.0% 92.9%
3784540 2.1.1.116 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Spt6_S1 0.66 52.0 4.83e-01 98.9% 68.2%
4233541 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.64 53.0 5.09e-01 98.9% 79.0%
1549576 2.1.1.1 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.64 53.0 4.51e-01 100.0% 56.2%
3385491 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.64 52.0 4.25e-01 100.0% 48.1%
3965688 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.62 51.0 4.41e-01 100.0% 57.8%
3383138 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 44.0 4.67e-01 75.0% 87.2%
4362720 2.1.1.48 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Elong-fact-P_C 0.61 39.0 4.56e-01 98.9% 98.3%
5015437 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.61 54.0 4.71e-01 100.0% 67.4%
3809079 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 39.0 4.44e-01 96.6% 93.3%
4039929 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.60 37.0 4.16e-01 98.9% 83.1%
3705431 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 53.0 4.91e-01 100.0% 93.9%
3383363 2.1.1.177 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1_RRP5 0.60 50.0 5.03e-01 97.7% 90.0%
3719687 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 38.0 4.10e-01 72.7% 77.3%
3997677 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 53.0 4.67e-01 100.0% 84.6%
4951503 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.59 52.0 4.29e-01 98.9% 97.5%
3930535 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 51.0 4.58e-01 98.9% 82.4%
4001702 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 51.0 4.68e-01 100.0% 80.9%
3244943 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 50.0 4.79e-01 98.9% 82.9%
3791987 2.1.1.25 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 0.57 51.0 4.66e-01 100.0% 81.7%
3213233 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 49.0 4.51e-01 100.0% 78.3%
3591459 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.55 36.0 3.68e-01 73.9% 69.4%
344114 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.55 44.0 4.02e-01 90.9% 93.5%
3372534 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.55 38.0 3.22e-01 73.9% 67.1%
3855663 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.53 43.0 3.84e-01 90.9% 91.5%
3281747 213.5.1.1 a+b three layers › Nat/Ivy › AlkZ C-terminal domain › AlkZ C-terminal domain › AlkZ-like 0.52 31.0 2.99e-01 100.0% 48.6%
3503630 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 36.0 3.31e-01 73.9% 62.6%