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MZ417522.1__QXN67734.1__X__00017

Bact-Vir

MZ417522.1__QXN67734.1__X__00017

Identity

Accession:
MZ417522 ↗
Kingdom:
phage

Quality

89.9 mean pLDDT

Taxonomy

Sangervirae› Phixviricota› Malgrandaviricetes› Petitvirales› Microviridae› Mycolicibacterium_phage_J1

TaxID: 2851030

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-50
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.82 59.0 4.49e-01 76.0% 62.3%
1rzmA01 3.30.70.1140 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phospho-2-dehydro-3-deoxyheptonate aldolase; domain 1 0.79 54.0 4.60e-01 92.0% 45.0%
3rrkA03 3.30.70.2750 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.73 51.0 4.57e-01 86.0% 51.4%
4mh4A02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.72 63.0 5.08e-01 96.0% 73.4%
1f2uB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.71 56.0 4.10e-01 92.0% 31.0%
1xexB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.70 57.0 4.05e-01 100.0% 29.2%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.70 60.0 4.73e-01 98.0% 89.9%
3aonA00 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.68 53.0 3.58e-01 84.0% 54.3%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.68 57.0 4.82e-01 96.0% 56.0%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 54.0 4.09e-01 86.0% 67.0%
4wjmA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.67 44.0 2.68e-01 94.0% 10.9%
1zcdA00 1.20.1530.10 Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain 0.67 57.0 3.43e-01 100.0% 72.3%
3kvnA02 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.66 56.0 3.47e-01 98.0% 99.4%
2ek0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.66 53.0 4.47e-01 94.0% 58.9%
1l3iA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.65 47.0 3.21e-01 78.0% 26.5%
3ofgB00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.64 46.0 3.89e-01 98.0% 44.8%
2e55A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 56.0 3.68e-01 100.0% 73.6%
1p1lA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 45.0 3.69e-01 80.0% 47.1%
2lfvA00 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.61 40.0 3.23e-01 78.0% 32.1%
2ztbA03 2.60.40.3040 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 36.0 3.73e-01 90.0% 56.2%
4lgvD02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.61 46.0 2.96e-01 84.0% 70.2%
4q05A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.61 50.0 3.13e-01 100.0% 24.5%
5vogA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 50.0 3.40e-01 94.0% 77.3%
6gdxA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 42.0 3.34e-01 78.0% 83.2%
5cm2Z00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 42.0 2.91e-01 78.0% 30.4%
3dmgA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 45.0 3.10e-01 90.0% 84.5%
2nq2D00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 38.0 2.48e-01 72.0% 13.7%
5flmA02 3.30.1360.140 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.57 41.0 3.05e-01 78.0% 28.7%
4ozjA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 44.0 3.49e-01 86.0% 86.5%
1k8kA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.56 40.0 3.31e-01 76.0% 100.0%
4yg6B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 43.0 3.09e-01 88.0% 54.0%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 37.0 2.76e-01 86.0% 23.6%
1i5eA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 47.0 3.16e-01 98.0% 33.2%
2p4wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 3.23e-01 80.0% 88.3%
1s7mA03 2.20.25.140 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.55 33.0 3.55e-01 82.0% 96.4%
3bt7A02 2.40.50.1070 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 45.0 3.34e-01 98.0% 55.9%
1z2zA02 3.30.70.3160 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 38.0 3.23e-01 78.0% 45.6%
1u0kA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.53 40.0 3.03e-01 86.0% 30.3%
2hoeA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 35.0 3.35e-01 92.0% 60.3%
2z86D02 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.51 40.0 2.67e-01 96.0% 83.5%
2fdoA00 3.30.1970.10 Alpha Beta › 2-Layer Sandwich › AF2331-like fold › AF2331-like 0.51 35.0 2.94e-01 74.0% 91.4%
1shyB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 40.0 2.40e-01 96.0% 23.6%
5b55A01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 36.0 2.59e-01 84.0% 58.4%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3806349 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.81 55.0 3.10e-01 72.0% 7.2%
3377363 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.78 43.0 2.36e-01 96.0% 3.8%
3252212 283.2.1.0 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.76 66.0 5.76e-01 100.0% 64.0%
3907411 5001.1.1.111 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1, 7TM_GPCR_Srw 0.75 58.0 3.53e-01 86.0% 16.4%
4009799 274.1.1.4 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSI 0.74 65.0 4.99e-01 98.0% 45.7%
None — 0.73 59.0 3.57e-01 92.0% 64.5%
3684538 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 54.0 3.87e-01 100.0% 28.7%
3479024 263.1.1.0 ↗ a+b three layers › SRF-like › SRF-like › SRF-like 0.67 56.0 5.43e-01 100.0% 83.6%
3831231 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.66 44.0 2.48e-01 72.0% 5.8%
3381794 207.1.1.57 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRRNT_2,LRR_4,LRR_6,LRR_8 0.65 57.0 3.09e-01 100.0% 6.1%
3436796 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.65 42.0 2.35e-01 70.0% 5.5%
4996620 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 47.0 3.90e-01 94.0% 43.3%
3168821 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.64 55.0 3.40e-01 100.0% 21.1%
3805784 109.4.1.3484 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, E_motif 0.64 44.0 2.98e-01 72.0% 21.8%
3723914 327.11.2.40 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF31052 0.62 42.0 3.92e-01 80.0% 53.8%
3502651 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.62 40.0 4.06e-01 78.0% 66.0%
1278602 223.3.1.1 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.62 44.0 4.21e-01 82.0% 65.0%
3381391 207.1.1.55 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 0.60 46.0 2.78e-01 88.0% 12.6%
3940062 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.60 48.0 2.90e-01 88.0% 44.8%
4955849 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.60 42.0 2.88e-01 80.0% 37.9%
3324101 207.1.1.47 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_6 0.59 45.0 2.66e-01 92.0% 10.4%
141070 223.3.1.1 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.59 41.0 4.02e-01 82.0% 66.7%
3362870 109.4.1.1269 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif 0.59 45.0 2.84e-01 82.0% 16.9%
3366822 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.59 39.0 2.41e-01 70.0% 77.6%
5078195 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 41.0 3.73e-01 88.0% 52.0%
3217385 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 44.0 3.66e-01 90.0% 49.4%
3423625 109.4.1.1371 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, Eplus_motif, E_motif 0.56 45.0 2.52e-01 88.0% 8.1%
3453496 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.55 39.0 2.31e-01 74.0% 67.4%
3823363 109.4.1.1371 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, Eplus_motif, E_motif 0.54 43.0 2.49e-01 86.0% 12.9%
3314246 109.4.1.1267 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.53 44.0 2.71e-01 94.0% 15.1%
3604405 2003.1.5.165 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11, Methyltransf_23 0.52 39.0 2.64e-01 88.0% 74.6%
3348687 109.4.1.1156 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › E_motif 0.52 46.0 3.43e-01 100.0% 44.6%
3915100 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.52 42.0 2.92e-01 88.0% 41.2%
3369483 109.4.1.1272 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif 0.52 45.0 2.84e-01 96.0% 20.8%
3641285 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.51 46.0 2.58e-01 100.0% 9.2%
3465965 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.51 42.0 2.45e-01 90.0% 10.6%
3468311 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.50 45.0 2.68e-01 100.0% 15.7%