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MZ422438.1__QXN67788.1__FPHOBKDP_00034__00034

Bact-Vir

MZ422438.1__QXN67788.1__FPHOBKDP_00034__00034

Identity

Accession:
MZ422438 ↗
Kingdom:
phage

Quality

68.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Listeria_phage_LPJP1

TaxID: 2852115

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-134
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3f8kA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.74 43.0 3.97e-01 100.0% 45.8%
2lrrA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.70 41.0 4.84e-01 96.2% 85.7%
2l01A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 42.0 4.73e-01 100.0% 81.8%
1u5tA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 45.0 5.14e-01 100.0% 96.0%
3cuqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 46.0 5.11e-01 100.0% 97.5%
5mmjh01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.62 36.0 4.11e-01 99.0% 78.7%
1u5tB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 38.0 4.48e-01 99.0% 95.7%
2zkzC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 34.0 3.70e-01 93.3% 65.5%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 40.0 4.00e-01 100.0% 69.5%
4ipuA00 3.55.40.10 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain 0.57 41.0 3.75e-01 74.0% 92.0%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 36.0 3.65e-01 95.2% 63.8%
6hmjA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 40.0 4.05e-01 78.8% 92.4%
3hgkE00 1.20.1280.110 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.53 37.0 4.19e-01 84.6% 100.0%
7eehA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.52 43.0 3.38e-01 93.3% 94.8%
1s2oA02 3.90.1070.10 Alpha Beta › Alpha-Beta Complex › Hypothetical Protein Ta0175; Chain: A, domain 2 › 0.52 32.0 3.74e-01 90.4% 90.1%
2cqhA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 28.0 2.94e-01 95.2% 54.8%
5x9vA01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.50 40.0 3.13e-01 88.5% 91.4%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3969578 3268.1.1.0 ↗ a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase 0.67 32.0 4.32e-01 91.3% 87.3%
4012162 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 45.0 3.82e-01 100.0% 48.2%
4274656 263.1.1.0 ↗ a+b three layers › SRF-like › SRF-like › SRF-like 0.58 30.0 2.74e-01 99.0% 36.4%
5046227 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 37.0 3.99e-01 100.0% 81.2%
3715519 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 35.0 2.87e-01 79.8% 32.2%
4481265 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.55 39.0 3.44e-01 73.1% 71.6%
3988962 223.1.1.6 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_1 0.54 40.0 3.03e-01 79.8% 33.3%
3477133 101.1.2.186 ↗ alpha arrays › HTH › HTH › winged helix domain › ASH2L-like_WH 0.54 39.0 3.90e-01 98.1% 71.8%
4945274 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 39.0 3.64e-01 79.8% 60.8%
5001141 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 40.0 4.15e-01 78.8% 83.0%
3740979 101.1.2.374 ↗ alpha arrays › HTH › HTH › winged helix domain › MCM4_WHD 0.54 43.0 4.38e-01 100.0% 86.7%
4567075 10.12.1.84 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › VKGC_lumenal_dom 0.52 31.0 2.27e-01 88.5% 21.4%
4972248 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 38.0 3.51e-01 78.8% 60.8%
3271532 223.3.1.8 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase2 0.51 36.0 3.06e-01 72.1% 92.6%
3318217 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.51 31.0 3.46e-01 92.3% 77.5%
3597393 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 42.0 3.78e-01 100.0% 63.3%
4977323 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 37.0 3.48e-01 78.8% 63.2%
3973446 223.3.1.1 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.50 36.0 2.89e-01 75.0% 90.9%
5082791 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.50 36.0 3.04e-01 100.0% 44.6%