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MZ422438.1__QXN67851.1__FPHOBKDP_00097__00097

Bact-Vir

MZ422438.1__QXN67851.1__FPHOBKDP_00097__00097

Identity

Accession:
MZ422438 ↗
Kingdom:
phage

Quality

60.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Listeria_phage_LPJP1

TaxID: 2852115

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 380-505
PDB
Domain cluster: rep: MF001361.1__ASZ77376.1__X__00001__D369-485
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00877.26 best NLPC_P60 89.7 1.50e-25 86.5% 87.6%
D2 medium residues 32-112
PDB
D3 medium residues 141-255
PDB
Domain cluster: rep: MZ475898.1__QYW05492.1__pEaSNUABM25_00136__00136__D550-637
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF21277.3 best T6SS_VgrG3-like_C 76.0 4.70e-21 95.7% 55.2%
D4 medium residues 256-343
PDB
Domain cluster: rep: OM112209.1__UKL29971.1__X__00001__D70-157
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF21277.3 best T6SS_VgrG3-like_C 44.0 3.00e-11 89.8% 42.1%
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ztaA00 1.10.490.130 Mainly Alpha › Orthogonal Bundle › Globin-like › 0.78 59.0 5.02e-01 79.5% 84.2%
3mvcB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.78 59.0 4.83e-01 79.5% 84.4%
1x9fA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.69 52.0 4.40e-01 79.5% 88.4%
8b9zK01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.69 48.0 4.78e-01 71.6% 72.5%
5ojcA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.69 53.0 4.47e-01 84.1% 85.1%
6fhpD00 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.69 47.0 5.44e-01 83.0% 100.0%
3hyuA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.68 53.0 4.58e-01 84.1% 89.4%
1urvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.68 53.0 4.43e-01 84.1% 87.7%
4xxiA00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.68 51.0 4.31e-01 80.7% 74.8%
2nrlA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.67 52.0 4.44e-01 84.1% 89.0%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.66 56.0 4.89e-01 93.2% 64.7%
1cqxA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.65 49.0 4.17e-01 80.7% 82.0%
1bqbA02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.63 56.0 4.74e-01 97.7% 92.4%
3wfwA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.62 41.0 3.51e-01 94.3% 42.8%
5k29A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.61 55.0 5.36e-01 100.0% 92.8%
3nqxA02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.61 55.0 4.62e-01 98.9% 91.1%
3qkxB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.61 45.0 3.57e-01 78.4% 70.2%
6jlzA01 1.20.120.1070 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain 0.61 40.0 3.78e-01 87.5% 54.6%
4omfA00 1.10.645.10 Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B 0.60 51.0 3.34e-01 93.2% 52.2%
5ko4A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.60 50.0 4.81e-01 95.5% 98.0%
3r2cA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.60 49.0 4.27e-01 90.9% 78.3%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.59 44.0 4.69e-01 84.1% 89.7%
2guzB00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.59 39.0 4.51e-01 92.0% 92.3%
1n83A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.59 45.0 3.26e-01 81.8% 74.1%
4ehsA00 1.10.860.10 Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A 0.58 48.0 4.35e-01 93.2% 86.3%
1oshA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.58 48.0 3.66e-01 93.2% 77.8%
4i4cB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 48.0 3.22e-01 98.9% 69.1%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.57 35.0 3.59e-01 100.0% 63.5%
2pv4A00 1.10.3440.10 Mainly Alpha › Orthogonal Bundle › Sama2622-like fold › Sama2622-like 0.56 39.0 3.37e-01 71.6% 63.4%
5n13A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.56 47.0 4.46e-01 95.5% 100.0%
1g2nA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.55 45.0 3.36e-01 93.2% 76.4%
3fnbA01 1.20.1440.110 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase 0.55 46.0 4.33e-01 98.9% 75.4%
8b70A01 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.54 46.0 3.02e-01 97.7% 89.2%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.54 39.0 4.13e-01 80.7% 86.1%
1jnrA03 1.20.58.100 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain 0.53 39.0 3.53e-01 88.6% 56.2%
2y44A00 1.20.1260.80 Mainly Alpha › Up-down Bundle › Ferritin › 0.53 47.0 3.74e-01 100.0% 83.7%
7zxkC01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.53 43.0 3.72e-01 90.9% 99.3%
1k74D00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.53 43.0 3.20e-01 94.3% 77.2%
3kavA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.53 43.0 4.16e-01 89.8% 99.0%
2au5A00 1.20.120.590 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › EF2947-like 0.53 39.0 3.45e-01 78.4% 66.7%
2oerA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 48.0 3.75e-01 100.0% 50.3%
3llkA02 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.52 44.0 3.80e-01 93.2% 74.1%
4it4A02 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.52 38.0 3.82e-01 86.4% 74.7%
2vixA03 1.20.1280.240 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.50 43.0 3.97e-01 98.9% 74.3%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1284710 235.1.1.25 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › T6SS_VgrG3-like_C 0.90 85.0 6.28e-01 100.0% 43.5%
3501428 106.1.1.0 ↗ alpha arrays › Globin-like › Globin-like › Globin-like 0.83 63.0 5.11e-01 79.5% 87.1%
2756454 235.1.1.13 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glyco_hydro_108,PG_binding_3 0.82 75.0 5.92e-01 100.0% 56.9%
3930013 106.1.1.0 ↗ alpha arrays › Globin-like › Globin-like › Globin-like 0.73 54.0 4.39e-01 78.4% 81.8%
4945001 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.72 62.0 5.95e-01 94.3% 98.0%
7430 235.1.1.13 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glyco_hydro_108,PG_binding_3 0.71 61.0 4.99e-01 94.3% 57.1%
3937339 106.1.1.0 ↗ alpha arrays › Globin-like › Globin-like › Globin-like 0.69 52.0 4.22e-01 79.5% 86.1%
3367799 605.4.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein 0.69 43.0 4.17e-01 100.0% 57.9%
3931593 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.68 38.0 4.02e-01 94.3% 61.3%
4010384 361.1.1.0 ↗ few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain 0.67 42.0 4.79e-01 97.7% 86.2%
3607678 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.66 50.0 4.14e-01 80.7% 92.3%
3935113 106.1.1.0 ↗ alpha arrays › Globin-like › Globin-like › Globin-like 0.66 51.0 4.16e-01 84.1% 83.5%
4104080 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.65 41.0 3.45e-01 97.7% 37.3%
3534849 101.1.10.7 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.65 55.0 5.09e-01 96.6% 72.2%
3987696 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.64 40.0 3.25e-01 97.7% 33.3%
3254138 192.31.1.6 ↗ alpha bundles › Long alpha-hairpin › CP12 › CP12 › Ifi-6-16 0.63 51.0 5.11e-01 88.6% 91.1%
4076556 607.1.1.1 ↗ alpha arrays › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › PEP-utilisers_N 0.63 56.0 5.15e-01 100.0% 87.8%
5032080 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.63 38.0 3.47e-01 97.7% 45.2%
4927086 6049.1.1.3 ↗ alpha bundles › PH0832-like › PH0832-like › PH0832-like › NitrOD2 0.62 53.0 5.24e-01 94.3% 100.0%
4015786 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.62 52.0 3.75e-01 94.3% 55.6%
4955309 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.62 41.0 4.30e-01 98.9% 75.0%
3647788 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.59 36.0 3.52e-01 97.7% 54.7%
171404 101.11.1.0 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.59 44.0 4.69e-01 84.1% 89.7%
3607465 603.2.1.0 ↗ alpha bundles › STAT-like › STAT › STAT 0.58 49.0 3.74e-01 94.3% 87.1%
3928739 611.8.1.0 ↗ alpha bundles › N-cbl like › C-terminal domain of E3 ubiquitin-protein ligase ARIH1 › C-terminal domain of E3 ubiquitin-protein ligase ARIH1 0.56 43.0 3.91e-01 100.0% 61.0%
3979099 361.1.1.0 ↗ few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain 0.55 41.0 3.41e-01 97.7% 45.2%
3701680 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.53 46.0 4.45e-01 98.9% 96.0%
4958744 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.52 41.0 3.80e-01 84.1% 76.4%
5050430 109.32.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Alkylsulfatase SdsA1 linker domain › Alkylsulfatase SdsA1 linker domain › Alkyl_sulf_dimr 0.51 37.0 3.57e-01 77.3% 91.4%
3199087 5038.2.1.1 ↗ alpha superhelices › Cytochrome c oxidase subunit I-like › MAPEG domain-like › MAPEG domain-like › MAPEG 0.51 38.0 3.32e-01 80.7% 93.6%